Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq76306 136 9e-27
seq41046 134 3e-26
seq28654 127 5e-24
seq27511 127 5e-24
seq21024 98.7 2e-15
>seq76306
Length=316
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| |||||| | || || ||||| ||||| | || |||||| || ||
Sbjct 60 CAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 119
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||||||| ||||| ||||| || ||||| || || |||
Sbjct 120 ACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 179
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||||||||| || || |||||||| | || | | || ||||| ||
Sbjct 180 AGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAATATC 239
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|| || ||||| || |||| | |||||| | || ||
Sbjct 240 CAGAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAG 277
>seq41046
Length=7774
Score = 134 bits (148), Expect = 3e-26
Identities = 156/208 (75%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || || ||||| || |||||||||||||| ||| ||
Sbjct 7379 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTCTGAT 7320
Query 177984 ACCATCGAGAACGTCAAA--CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| || || || || ||| | ||| || || || || ||||| || || || |||||||
Sbjct 7319 ACTATAGAAAATGTTAAAAGCTAAA-ATCCAAGATAAGGAAGGTATTCCACCAGACCAGC 7261
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | ||||| || || ||||| || ||||||||| | || | | || || |||
Sbjct 7260 AACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACA 7201
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| ||||| ||||| ||| ||||||||||
Sbjct 7200 TTCAAAAGGAATCCACATTGCATCTTGT 7173
>seq28654
Length=3315
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| || || |||||||| || || | || || || ||||||
Sbjct 1243 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCAGAC 1184
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || ||| |||||||| || || |||||||| ||||| || || |||
Sbjct 1183 ACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 1124
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || ||||| || |||||||| | || || | || || || ||
Sbjct 1123 CGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAATATC 1064
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||| || || || || ||||
Sbjct 1063 CAGAAAGAGTCGACCCTTCA-CTTG 1040
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| ||||| |||||||| || || | || || ||| || |||
Sbjct 2155 CAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTGAC 2096
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || || ||||||||||| || |||||||| || |||
Sbjct 2095 ACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAA 2036
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || | |||||||| | || || | || || ||| ||
Sbjct 2035 CGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAACATC 1976
Query 178104 CAAAAAGAATCAACACTGCA 178123
||||||||||| || ||||
Sbjct 1975 CAAAAAGAATCTACTTTGCA 1956
Score = 118 bits (130), Expect = 3e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| ||||||||||| ||||| | ||||| || || |||
Sbjct 2383 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCGAC 2324
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||| || |||||||| || || || || || || ||
Sbjct 2323 ACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 2264
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| ||||| || || |||||||| || |||||||| | || | | |||||||| |
Sbjct 2263 AGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAATATT 2204
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| ||||| || || ||| | || |||
Sbjct 2203 CAAAAGGAATCTACCCTACATTTAGTATTG 2174
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || || || || ||||| | |||||||| || |||
Sbjct 787 CAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCGAC 728
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| || ||||| || || || || || ||||| ||
Sbjct 727 ACTATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAG 668
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || |||||| | || ||||| | ||||| | || |||||| ||
Sbjct 667 CGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAACATC 608
Query 178104 CAAAAAGAATCAACACTGCAT 178124
||||||||||| || |||||
Sbjct 607 CAAAAAGAATCTACTTTGCAT 587
Score = 111 bits (122), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || |||||||| || || || ||||| || || | || || |||
Sbjct 2617 AAAATGC---AGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 2561
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || || || || ||| || ||||| ||||| ||||| || |||||
Sbjct 2560 CCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCA 2501
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||||| | || ||||| ||||| || | ||||| ||| | |||||| | ||
Sbjct 2500 GATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGAC 2441
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | ||||||||||| || || || ||||
Sbjct 2440 TATAATATTCAAAAAGAATCTACTCTTCA-CTTG 2408
>seq27511
Length=800
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || || || || ||||| ||||| | || |||||| || ||
Sbjct 220 CAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTCTGAT 279
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||| ||||||||||| || ||||| ||||| ||
Sbjct 280 ACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCAACAG 339
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| ||||| || || ||||||||||| ||||||||| | || | | |||||||| |
Sbjct 340 AGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAATATT 399
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || ||||| || |||| ||||
Sbjct 400 CAGAAGGAATCTACTTTGCA-CTTG 423
>seq21024
Length=8359
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || || || || || |||||||| ||||| || ||| |||
Sbjct 1852 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 1911
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| |||||||| || || ||||| || |||||||| ||||| || || ||||||||
Sbjct 1912 ACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCA 1970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1199457802645102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |