Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23505 91.5 1e-13 >seq23505 Length=16657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 101745 CTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATG 101804 ||| || ||| | |||||||||||| || || |||| ||| ||||| ||||| || | Sbjct 10073 CTAAATCAGTTATATGAGCAATCATATGTGTCAATAGAGCATAACTAGCTATGTTGAAAG 10014 Query 101805 GCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCAC 101864 | | || | |||||||| || |||||| |||| ||| ||||| |||||| | Sbjct 10013 GAATACCAAGACCCATATCTGCGCTTCTTTGGTACATCATACAAGAAAGTTTTCCACTAG 9954 Query 101865 AGACATAAAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAA 101923 | |||| ||| || ||| ||| ||||| || || | ||||||| | ||||| Sbjct 9953 ATACATGAAACTGTACTAA-ACAGTGACATGGAGGAAGTGCCATTTTGCTTAAATCTGAG 9895 Query 101924 ACATTCCAAGCACACATTAACATCCTTCTATC 101955 |||||| ||||| | ||||||||||| || Sbjct 9894 GGATTCCATGCACATACCAACATCCTTCTGTC 9863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 ||||| || || ||| ||| || | ||||| | ||| | ||||| || || |||||| Sbjct 9567 CCTTCCTCCCTTTCAGTAAATCCTAAATTATCGAGAAACGTCCTAGAACCGTTTGCATCC 9508 Query 102149 CAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 ||||| || || |||||| |||| |||| |||||||||| || | ||| Sbjct 9507 CAAATATGAACTTTTTTATCTGATAAAACTTTACTGTTAGTAGATCCTGAGAGCATCCAT 9448 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCA 102268 || || ||||| | || |||| | |||||||| ||| |||||||| | ||| || || Sbjct 9447 AAAAGCTCTTCTATTACGCCTCGCACAAATACTCGCTTTGTAGTTAATAATGGTAAGACA 9388 Query 102269 TT 102270 || Sbjct 9387 TT 9386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360573357166709