Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq89413 104 2e-17 seq9095 102 7e-17 seq58137 87.8 1e-12 seq52194 87.8 1e-12 seq21475 84.2 2e-11 seq133270 82.4 6e-11 >seq89413 Length=986 Score = 104 bits (114), Expect = 2e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 97992 GGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGG 98051 || |||||||| | |||| || ||||| |||||||||| || ||||| ||||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 98052 ATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCG 98111 || | |||||||| || || || || || || || || || || |||| ||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 98112 GGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTAC 98171 || ||| | || || || || || || ||||| || || || || ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 98172 AACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACA 98231 | |||||| | | ||| || | || | |||||||| || | | || ||| Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 98232 CCCCACTCGACAAAGTACGCAGCGACAATTTT 98263 ||||| || || ||||| ||| | |||| ||| Sbjct 746 CCCCATTCTACGAAGTAGGCACCCACAACTTT 715 >seq9095 Length=14658 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| |||| |||||||| || || ||| |||| | | Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||||| |||||||| || | ||| |||||| Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||| ||||| || || || | |||||| ||| | | || ||||| Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||| |||||||||||| | || |||| |||| Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTACG 5994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || ||| |||| || ||||| || || ||| |||| | | Sbjct 4841 AATGCAAATTTTCGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 4782 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| || || |||||| | || |||||| Sbjct 4781 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 4722 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||| || ||||| || || ||| |||||||| || || | || || || Sbjct 4721 ACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAGACTATAA 4662 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||| || || ||||||||||||||| Sbjct 4661 TATCCAGAAAGAATCTACTCTTCAC 4637 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| |||| |||||||| |||||| ||| |||| | | Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||| ||| || |||||||| | || |||||| Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || ||||| || || ||| |||||||| || || | || || ||| Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 4889 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| |||||| | || | ||||| || || |||| || Sbjct 4888 ATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGG 4842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | || ||| |||| |||||||| || || ||| || ||| | Sbjct 5981 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACACTGGAAGTTGAGCCCTC 5922 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| ||||| ||||| | || ||| || Sbjct 5921 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 5862 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||| ||||| || || || | |||||| || || | || ||||| Sbjct 5861 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGTCTGACTACAA 5802 Query 25214 TATTCAAAAGGAATCTACT 25232 |||||| |||||||||||| Sbjct 5801 TATTCAGAAGGAATCTACT 5783 >seq58137 Length=8097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || || | |||||| | ||||| ||||||||||| ||| ||||| Sbjct 7530 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 7589 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || |||||| || || ||||| | || |||| Sbjct 7590 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 7649 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | || || || || || ||||||||||| || | | || ||| Sbjct 7650 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTAC 7709 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| ||||||||||||||| |||| || || Sbjct 7710 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCG 7747 >seq52194 Length=4646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| |||| ||| | || ||||| || || || ||| || || | Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCT 4518 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||| ||| | ||| ||||||| Sbjct 4517 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 4458 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||||||||| |||||||| |||||||| || | | || ||||| Sbjct 4457 CAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAAC 4398 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || |||||||| ||||| ||||| Sbjct 4397 ATCCAAAAGGAGTCTACCCTTCA 4375 >seq21475 Length=13715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 25026 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 25085 ||| | | ||||||||| ||| |||| || | ||||| |||||||||||| ||| | Sbjct 10887 AGTCTCACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTG 10946 Query 25086 GAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 25145 || || | || || | | || | || ||||| ||||| |||||| | || Sbjct 10947 GAGGCCTCTGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCA 11006 Query 25146 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCC 25205 ||| || ||| | | |||||||| || |||||| | |||||| || || | Sbjct 11007 CCAGACCAGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCT 11066 Query 25206 GATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||||||||| || | || | ||| | ||| | || ||||| Sbjct 11067 GACTACAACATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGG 11122 >seq133270 Length=334 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||| | ||||| ||||||||||| ||||| ||| Sbjct 318 GACAAAGAAGGCATTCCTCCGGATCAACAACGTCTTATTTTTGCGGGCAAGCAATTAGAA 259 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | ||||| | || ||||| || ||||| ||||||||| | ||| | || Sbjct 258 GATGGTCGTACACTAT--CTGACTACAACATCCAAAAAGAATCTACTTTGCACTTAGTAC 201 Query 25246 TACGATTACGAGGAGG 25261 | || ||| |||| || Sbjct 200 TTCGTTTAAGAGGTGG 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410025991026026