Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9095 113 5e-20 seq52194 109 6e-19 seq7375 104 2e-17 seq21475 93.3 4e-14 seq89413 91.5 2e-13 seq133270 87.8 2e-12 >seq9095 Length=14658 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || |||||||| || ||| | || || ||||| | Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | ||| |||| |||||||| ||||| || | || || Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | || || || || ||||| || | |||||| | ||||| || Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 4889 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || ||||| |||||||||| Sbjct 4888 ATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCG 4854 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || |||||||| || ||| | || || ||||| | Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | ||| |||| |||||||| ||||| || | || || Sbjct 5692 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 5633 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | ||| || || || ||||| || | |||||| | ||||| || Sbjct 5632 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 5573 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || ||||| |||| ||||| Sbjct 5572 ATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCG 5538 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| |||||||| || || |||||||| ||||| | || || ||||| | Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | |||| ||||| | || ||||||||||| ||| | || || Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | || || || ||||| || || | ||||| || |||||||| Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| | || ||||||| || | || |||| || || Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTACGGCTGAGAGGTGG 5982 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || ||||||||||| | || || ||||| | Sbjct 6664 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 6605 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| ||| |||| ||||| || ||||| || | || || Sbjct 6604 GATACAATCGAAAACG-TAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 6546 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | ||| || || || || || || | |||||| | ||||| || Sbjct 6545 ACAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCAGACTATAA 6486 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || |||| | |||||||| Sbjct 6485 TATCCAGAAGGAGTCTACTTTGCACTTGGTGTTGCG 6450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||||||||| || || ||||| || || | || || || | | Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 5237 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | |||||||| || || ||||| || ||| | ||||| Sbjct 5236 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 5177 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| || ||||| || || || | ||||| || ||||||||| Sbjct 5176 CAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTATCAGACTACAAC 5117 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| | || | ||| |||| | || |||| || || Sbjct 5116 ATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| ||||| || || || |||||||| ||||| | || || || || | Sbjct 5981 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACACTGGAAGTTGAGCCCTC 5922 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||||| || || || || || || | ||||| Sbjct 5921 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 5862 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | || || || ||||| || || | ||||| || |||||||| Sbjct 5861 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGTCTGACTACAA 5802 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| | || | ||| |||| | || |||| || || Sbjct 5801 TATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || || || || ||||| ||||| | || || ||||| | Sbjct 5525 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 5466 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | |||| ||||||| ||||| || || || || | ||||| Sbjct 5465 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | ||| ||||||||||| || || | ||||| || ||||| || Sbjct 5405 ACAGAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAA 5346 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || |||| |||| |||| Sbjct 5345 TATTCAAAAGGAATCTACTTTGCACTTAGTTCTGCG 5310 >seq52194 Length=4646 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || ||||| || || || | || || || | | Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCT 4518 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || |||| || |||||||| || ||| | || || Sbjct 4517 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 4458 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || |||||||||||||| || | || ||| | ||||||||| Sbjct 4457 CAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAAC 4398 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| | || || ||| |||| |||| Sbjct 4397 ATCCAAAAGGAGTCTACCCTTCATTTAGTACTGCG 4363 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| || ||||| ||||| | || || ||| || | Sbjct 3888 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 3829 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | || || | ||||||||||| || ||| | || || Sbjct 3828 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAA 3769 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| ||||| |||||||| || | || || ||| |||||||| Sbjct 3768 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 3709 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||| |||| |||| Sbjct 3708 ATTCAGAAAGAGTCCACTTTGCA 3686 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||||||||| || ||||| || || || ||||| || || | || || | ||||| Sbjct 4117 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTAG-AGCCAT 4059 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | | ||| | || | || |||| || || || || || || | || | Sbjct 4058 CCGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATC 3999 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| || |||| ||| || || || ||||| || | |||||||| ||||||| Sbjct 3998 AACAACGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTACA 3939 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 | |||||||| ||| |||| || || Sbjct 3938 ATATCCAGAAAGAGTCCACCCTTCA 3914 >seq7375 Length=9560 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || || || || || | || || || || ||||||| || |||||| | | Sbjct 4637 TTATTCAATGCAATTGAAACTCTACCATGTGTTAAGAAGAAGGCAGACTGGGCGTTACAG 4696 Query 117005 TGGATCGCCGGCAGAGA-GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||||| | ||| ||| ||| | || || || || | | || || || || || || Sbjct 4697 TGGATCGGCAGCA-AGACGGCTACATTTGGAGAACGTATAATTGCTTTTGCAGCGGTTGA 4755 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | || || || ||||| || || | ||||||||| | || ||||| || || || Sbjct 4756 GGGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGTCTGAT 4815 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||| ||||||||||||| || || || || ||||| |||| Sbjct 4816 GCCCGGATTGACTTTCAGCAATGAACTTATTTCTAGGGATGAGG 4859 >seq21475 Length=13715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || ||||| |||||||| ||| |||| || || ||| | Sbjct 10895 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 10954 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | ||||| | || || || || || || | ||||| Sbjct 10955 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 11014 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||| || || || | || || | |||||||| Sbjct 11015 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 11074 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| || ||||| |||| ||||||| ||| Sbjct 11075 CATTCAAAAGGAATCCACATTGCATCTTGTG 11105 >seq89413 Length=986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 65759 GGCTCGCTCCACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGC 65818 |||||| |||| | | || || ||||| || || || | || ||||| || ||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 65819 ACCGCCAGCTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCC 65878 | | | |||||||| || ||||| || || ||||| || || | ||| ||||| Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 65879 GCGATGGACTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTAC 65938 |||| || | || || ||||||||||| |||||||| || || | |||||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 65939 AGCAGATGCGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACG 65998 |||| || || || || || | || | || |||| || | | || || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 65999 CCCCACTCGACGAAGTAGGCGGCCACCACCTTGCC 66033 ||||| || ||||||||||| |||| || || || Sbjct 746 CCCCATTCTACGAAGTAGGCACCCACAACTTTTCC 712 >seq133270 Length=334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || || ||||| ||| | || || ||| || | Sbjct 183 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 124 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||||| ||||||||||||||||| | || ||| Sbjct 123 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGCATCCCTCCTGATCAG 64 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || |||| || | |||||||| ||||||||| Sbjct 63 CAGCGTCTTATCTTTGCCGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 4 Query 40870 ATC 40872 ||| Sbjct 3 ATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514227667089840