Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq52194 122 8e-23 seq9095 120 3e-22 seq89413 107 2e-18 seq21475 102 7e-17 seq58137 100 2e-16 seq133270 95.1 1e-14 >seq52194 Length=4646 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||| ||||| ||||| || |||||| |||||| | |||||| ||| Sbjct 3464 GTAGATTCTTTTTGGATGTTATAATCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCA 3523 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||||||||| || || || || ||||||||||||||| || || ||| Sbjct 3524 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTA 3583 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | ||| ||||| | || | || || || || ||||| Sbjct 3584 ACATTTTCGATAGTGTCGGATGGCTCAACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTC 3643 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 3644 TTAACGAAGATCTGCAT 3660 >seq9095 Length=14658 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| || || ||||||||||| | || |||||| |||| ||| || || ||||||| Sbjct 5100 GTAGATTCCTTCTGAATGTTGTAGT--CTGATAGTGTGCGTCCATCTTCAAGTTGTTTTC 5157 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || || | ||| || || || || || |||||||| ||| ||||||| || Sbjct 5158 CAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCTT 5217 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | ||||| | ||| || || | || | ||||| || || || | Sbjct 5218 TAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGCG 5277 Query 118720 TTTTTACAAAAATCTGCAT 118738 ||||||||||||| ||||| Sbjct 5278 TTTTTACAAAAATTTGCAT 5296 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| | |||||||||||| | |||||||| || || || || || || | Sbjct 6438 CCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 6497 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| ||||| || ||||| ||| | || || | || ||||| ||||| Sbjct 6498 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 6557 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| ||||||||| ||| ||| || || | ||||| || || | ||| || || Sbjct 6558 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCT-TCCAC 6616 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || || | ||||||||| || || |||||| Sbjct 6617 TTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 6665 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | ||||| || |||||||| || || || || |||||| ||| || Sbjct 5316 ACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGACAGAGTGCGTCCATCTTCT 5375 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| |||||| | || || | ||| || || ||||| || || ||||||||| | Sbjct 5376 AGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 5435 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||||| | ||| | || || | ||| || || || | || | ||||| Sbjct 5436 ATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTTTT 5494 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||||||||| ||||| Sbjct 5495 CCCAGTCAGTGTCTTTACAAAAATTTGCAT 5524 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| ||||| ||||||||||||| | |||||| |||| ||| || ||||| |||| Sbjct 6240 GTAGATTCTTTCTGAATGTTGTAAT--CAGATAGTGTGCGTCCATCTTCTAGCTGCTTTC 6297 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || || ||||| || || |||||| || Sbjct 6298 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTT 6357 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | || || | ||| || || | || | || ||||| ||||| | Sbjct 6358 TAACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGTCTTGCCAGTCAGTG 6417 Query 118720 TTTTTACAAAAATCTGCAT 118738 | ||||| ||||| ||||| Sbjct 6418 TCTTTACGAAAATTTGCAT 6436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||| ||||| || | |||||| ||| || ||||| |||||| Sbjct 6012 GTAGATTCCTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCA 6071 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || | || ||||| || || |||||||| || || ||||| ||| Sbjct 6072 GCAAAAATAAGTCTTTGTTGATCTGGGGGAATGCCCTCTTTATCCTGGATTTTCGCCTTA 6131 Query 118662 ACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | ||| || || || | || | |||||||| ||||| || Sbjct 6132 ACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGT 6190 Query 118721 TTTTACAAAAATCTGCAT 118738 ||||||||| || ||||| Sbjct 6191 TTTTACAAATATTTGCAT 6208 >seq89413 Length=986 Score = 107 bits (118), Expect = 2e-18 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| || |||||||| || || | || | |||||||| || Sbjct 715 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTAGAT 774 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | || | || |||||||| | || || ||||| || Sbjct 775 CGTATACCTATACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 834 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 ||||||||||| || ||||| | | |||||||| | ||| | || || || Sbjct 835 GACGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCC 894 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | || ||||| || | || |||||||| ||||| ||| ||||||| Sbjct 895 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 954 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACC 21840 || ||||| || | || ||||||||||| || Sbjct 955 CCACAAAAAGGATTGTCTTCATGGAACGAGCC 986 >seq21475 Length=13715 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | ||| | || | ||| || || |||||||||||||| || Sbjct 11124 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 11065 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || || ||||| ||||| |||| | ||| ||||| || || | Sbjct 11064 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 11005 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||||| ||| || | ||| | || || | | ||| | Sbjct 11004 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCA 10945 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| || || || || || || ||||| ||||| Sbjct 10944 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 10896 >seq58137 Length=8097 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| ||||||||||| ||||| || | ||||| || Sbjct 7745 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCCGTC 7686 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||||||| | || | ||| || ||||| ||||| ||||| |||||||| Sbjct 7685 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 7626 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | || || | || || || | || | || Sbjct 7625 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 7566 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| ||||| |||||||| Sbjct 7565 TTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7533 >seq133270 Length=334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 118557 ATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGC 118616 |||||||| || || ||||| ||| || | || || || || |||| |||||| Sbjct 2 ATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCGGCAAAGATAAGACGC 61 Query 118617 TGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTG 118676 |||||||| ||||| |||||||| |||||| |||||| ||| || | ||| | || Sbjct 62 TGCTGATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTA 121 Query 118677 TCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 || | | || || || | ||| | || || || || || ||||| |||||||||||| Sbjct 122 TCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGC 181 Query 118737 AT 118738 || Sbjct 182 AT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433016371347628