Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq18220 149 7e-31 seq52194 122 1e-22 seq31600 111 2e-19 seq7010 111 2e-19 seq9095 109 6e-19 seq38911 98.7 1e-15 seq21475 93.3 5e-14 seq48325 89.7 6e-13 seq134579 87.8 2e-12 seq58137 87.8 2e-12 seq147150 84.2 2e-11 seq36792 84.2 2e-11 seq100443 82.4 9e-11 >seq18220 Length=5896 Score = 149 bits (164), Expect = 7e-31 Identities = 213/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 97126 TATTTGGATCATGTGTTTTTAATGAGTTACGACTTCAAAGGCGCATGGTCCAACACGGAT 97185 ||| |||||||| | || || ||||||||||||||||| || || ||||| || | Sbjct 5878 TATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATGATACT 5819 Query 97186 TTGGGTCATCAAACACCATTGTACGCACCTTCGTGGAACCCTGACGACAAGTACACAACT 97245 | || |||||||| ||||||||||| ||| ||||||| || | || | |||||| || Sbjct 5818 CTAGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTACACATCT 5759 Query 97246 GACTATGCCGTAAAAGAACTGCTCAAGCAAAAAGTACCTTCCAACAAAATTGTAGTTGGA 97305 |||| | |||||| | |||| ||| ||| | | || || |||||||| || Sbjct 5758 GACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGTAGTAGGT 5699 Query 97306 GTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCACGATTACAAGAACAATAACGTATTT 97365 || || ||||| || | || |||| |||||| || |||||||| |||| | || Sbjct 5698 GTTGCTATGTATGGTCGTGGCTGGACTGGTGTTCATGATTACAAAGACAACATTCCCTTC 5639 Query 97366 ACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATGGGAAAACGGTGTCGTCGATTATAGG 97425 || ||| ||| || || || || ||||| || ||| || |||| || || || || ||| Sbjct 5638 ACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTTGACTACAGG 5579 >seq52194 Length=4646 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| |||||| || ||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||| || || || || | || Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 3782 ATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 3841 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 3842 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 >seq31600 Length=2932 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1533 AAAAAGTTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1474 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||||||| ||||| Sbjct 1473 TTACCACTATACTACCGAAGATTG 1450 >seq7010 Length=9211 Score = 111 bits (122), Expect = 2e-19 Identities = 94/113 (83%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4391 AAAAGTATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4332 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTA-CAATCCTA 60168 | |||||||||||||||| ||| || | ||| ||||| |||| ||||| || Sbjct 4331 TTACCACTATACTACCGAAGATGTAACAAATATGTTGAA-ATTATCAATCTTA 4280 >seq9095 Length=14658 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||| |||| || || ||||| || |||||||||||||| || |||| | Sbjct 5298 CCACCTCTTAGCCGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGAC 5357 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||||||| || |||||||| || || | ||| ||||| | || Sbjct 5358 AGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 5417 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||| | || | | | | || || | |||||| Sbjct 5418 ATACCTTCCTTGT-CTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 5476 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| ||||| || || || ||||||||||| ||||||||| Sbjct 5477 TTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 5525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || |||||||||||| ||||| || |||||| || ||||| || || | Sbjct 6437 TCCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGA 6496 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || || || ||||| || ||||| || |||| || || || | || Sbjct 6497 CAATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 6556 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||| | ||| | |||| || | | | | || || | ||||| Sbjct 6557 AATGCCTTCCTTGT-CTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 6615 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || |||| || ||||| ||||||||||| Sbjct 6616 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 6664 >seq38911 Length=4699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4259 AAAAAATCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4316 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 4317 TGACCACTATACTACCGAAGA 4337 >seq21475 Length=13715 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| | |||||||||| ||||||||||| ||||| |||| || || || | || || Sbjct 11105 CACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTC 11046 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||| || |||||||| || || | || |||||||| | || | | ||||| || Sbjct 11045 TAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTG 10986 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||| | | | | || || | ||||| |||| || |||||||| Sbjct 10985 GATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTT 10926 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| || ||||| || || ||||||||| Sbjct 10925 ACCCGTAAGGGTCTTGACGAAAATTTGCATT 10895 >seq48325 Length=5009 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||| |||||| ||||| ||||| |||||||||||| Sbjct 4399 CGGCGGGGAATCGAACCCCGGTCTCCCGTGTGACAAGCGGAGATACTGACCACTATACTA 4340 Query 60131 CCGAGGA 60137 |||| || Sbjct 4339 CCGAAGA 4333 >seq134579 Length=311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||| ||||| |||||||||||||||| |||| ||||| | |||| Sbjct 199 TCTCCCCGGCGGGGAATCAAACCCCGGTCTCCCGCGTGACATGCGGGGATACTTATCACT 258 Query 60125 ATACTACCGAGGA 60137 ||| ||||||||| Sbjct 259 ATAGTACCGAGGA 271 >seq58137 Length=8097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || || |||||||||||||| |||| || || || | Sbjct 7748 ACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCC 7689 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||||| |||||||| || | || || || || | || | || ||||| Sbjct 7688 GTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 7629 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| |||| | ||| | | | | || ||| | ||| || || | || | Sbjct 7628 GT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAA 7570 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| ||||| || || || |||||||| |||||||| Sbjct 7569 TGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq147150 Length=242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAA 60142 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATGGTG 60 Query 60143 TATA 60146 |||| Sbjct 61 TATA 64 >seq36792 Length=1665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1665 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGAT 1610 >seq100443 Length=576 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| |||||| ||||| |||||||||||||||| ||| ||||| | |||| Sbjct 283 TCTCCCCGGCGAGGAATCAAACCCCGGTCTCCCGCGTGACATCCGGGGATACTTATCACT 342 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 343 ATACTACCGAGGA 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570717144176520