Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2
02015-12-17] 153,959 sequences; 293,608,641 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq27008 102 6e-17
seq9095 102 6e-17
seq52194 100 2e-16
seq21475 95.1 9e-15
seq133270 91.5 1e-13
seq58137 91.5 1e-13
seq89413 84.2 2e-11
>seq27008
Length=12848
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20099 ACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAA 20158
|| || || || || || || |||||||| ||| ||| ||| | || |||||
Sbjct 4262 ACCTTCTGGACGTACTCTCGGCCTTTGACCAGCTGCACGTAGGCGCACCGGTCGAACCAG 4321
Query 20159 CGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAA 20218
|| ||||| || ||||| || | ||| || || ||||| || || || ||||| | ||
Sbjct 4322 CGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTGAGCCCGCCGTCACAG 4381
Query 20219 TAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCA 20278
|| || ||| |||||| ||||| | || || | |||||||||||||| | |||
Sbjct 4382 TAGAAGCACTTAGTTTTGTCACCCTGGCCGGTGTAGAAGAATCCCGCTTCGGCGAGTTCC 4441
Query 20279 TCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307
|| ||| | |||||||| ||||| |||||
Sbjct 4442 TCAGGCTTCTGCTTCATACTGCGAGGCCA 4470
>seq9095
Length=14658
Score = 102 bits (112), Expect = 6e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||| | || | || ||||| || ||||| |||||||| | || ||| | |||
Sbjct 5768 AAGTACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATC 5827
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | || || || ||| | ||||| |||||||| || || | |||||||||||
Sbjct 5828 TTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTATC 5887
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| ||| || | | | | |||||| |||||| ||| | ||||| |
Sbjct 5888 TTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGT 5947
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|||||| |||| ||| |||||||| |||||||||
Sbjct 5948 TTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 5981
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||| | || | || ||||| || |||||||||||||| | | ||| | |||
Sbjct 5084 AAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATC 5143
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | |||||| || || | ||||| || ||||| || ||| | || ||||||||
Sbjct 5144 TTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATC 5203
Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291
||||| |||| || || | | ||| |||||| ||||| ||||| || ||
Sbjct 5204 TTGAATTT-TTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAG 5262
Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || | ||||||||||||||||||||
Sbjct 5263 TTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
||||| || || | |||||| || |||||||| || || || ||||| | || |||
Sbjct 4623 AGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGTACGC 4682
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| |||||||| ||| || || ||| | || |||||||||||||| || | ||||||
Sbjct 4683 CCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCC 4742
Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287
|| || ||||| ||| || | | | | || ||| | || ||| | |||
Sbjct 4743 TTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTG 4802
Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| |||| || |||| ||| ||||| ||||||||||||
Sbjct 4803 ATAGTTTTCCCAGTCAGTGTCTTTACGAAAATTTGCATT 4841
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||| | ||| | || |||||||| ||||||||||| || | | ||| | ||||
Sbjct 6225 AGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCT 6284
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | || || || ||| | ||||||||||| ||||| ||| | || || |||||
Sbjct 6285 TCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCC 6344
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| | || || || | | ||| || ||| ||||| ||| | ||||| |
Sbjct 6345 TGAATTT-TCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGT 6403
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| |||| ||| ||||| ||||||||||||
Sbjct 6404 CTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 6437
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||||| || | || ||||| || ||||| |||||||| | | || | ||||
Sbjct 5997 AGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCT 6056
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | || || || ||| | ||||||||||||||||| ||| | ||| || |||||
Sbjct 6057 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGAATGCCCTCTTTATCC 6116
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| ||| || | | ||| || ||| | || ||| | ||||| ||
Sbjct 6117 TGGATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTT 6176
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| |||| |||||||||||| |||||||||
Sbjct 6177 TTGCCAGTCAGTGTTTTTACAAATATTTGCATT 6209
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| || || || || || || ||||| | || ||| | |||||||| ||| || ||
Sbjct 4872 GTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCA 4931
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247
||| | || |||||||||||||| || | |||||| || || ||| | |||| ||
Sbjct 4932 GCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCT-TTGCTTT 4990
Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307
|| | | | | |||||| | || ||| | ||| || ||||||| |||| |||
Sbjct 4991 AACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGT 5050
Query 18308 TTTTACAAAAATTTGCAT 18325
||| ||||||||||||||
Sbjct 5051 TTTCACAAAAATTTGCAT 5068
>seq52194
Length=4646
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||||||| |||||| || || ||||| || || |||||||| | |
Sbjct 3890 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 3949
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| ||| || || || ||||||| | ||||||||| ||
Sbjct 3950 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 4009
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| ||| | | || || || | | ||| ||||| |||||
Sbjct 4010 ATTCCTTCCTTATCTTGAATCT-TAGCTTTAACATTTTCAATGGTGTCGGATGGCTCTAC 4068
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || || |||| || || | |||||| ||||| |||||||||
Sbjct 4069 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 4117
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||| | ||||| || || || ||||| ||||||||||| | | || | ||||
Sbjct 4366 AGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCT 4425
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| |||||||| ||| ||||||| | ||||||||| ||| | || || |||||
Sbjct 4426 TCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCT 4485
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
||| | ||| || | | ||| |||||| ||||| ||| | || || |
Sbjct 4486 TGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTACTTCCAGAGTTATAGTC 4545
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | ||| || ||||| ||||||||
Sbjct 4546 TTGCCTGTTAGTGTCTTGACAAATATTTGCAT 4577
>seq21475
Length=13715
Score = 95.1 bits (104), Expect = 9e-15
Identities = 172/248 (69%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153
|||| ||||| || |||| ||| || | || | ||| ||||| ||||||||||||||||
Sbjct 11126 GTTA-CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGT 11068
Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213
| | || ||| | |||||| | |||||| || ||| |||| | | ||| || ||
Sbjct 11067 CAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTG 11008
Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC 18272
|| | ||||||||||| |||| | || || || | | | | ||| ||| || |
Sbjct 11007 GTGGAATACCTTCCTTATCTTGGATTT-TAGCTTTTACATTTTCTATAGTATCAGAGGCC 10949
Query 18273 TCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332
|| || | ||| ||| |||| || || | || || || |||||||||||| | | |
Sbjct 10948 TCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGA 10889
Query 18333 CTCTTATA 18340
|| | |||
Sbjct 10888 CTGTAATA 10881
>seq133270
Length=334
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||| | ||| | || ||||||||||| ||||||||||| | | ||| || |||
Sbjct 199 AAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGTGTACGACCATC 258
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| ||||| ||||||||| | ||||| | |||||||||| || | |||||| || ||
Sbjct 259 TTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTC 318
>seq58137
Length=8097
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | | ||||| |||||| || |||||||||||||| |||||||| |
Sbjct 7760 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGA 7701
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||||||||||| || || || | || | | ||||||||| ||
Sbjct 7700 AAGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 7641
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||||||| || ||||| | || || || | | ||| ||| || || ||
Sbjct 7640 AATGCCTTCCTTGTCTTGAATTT-TGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 7582
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||| | || ||| |||| || || | |||||| ||||| || ||||||||
Sbjct 7581 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530
>seq89413
Length=986
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 91687 GGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGT 91746
||||||||||| | || | ||||||||||||||||||| |||||||| ||||||||
Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927
Query 91747 ATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCA 91806
|| || ||||| || || || || || | || || || || | || ||||| ||
Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867
Query 91807 GGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTA 91865
|| ||| | ||| || | || || || |||||||| || ||||| |||||
Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTA 808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378632208283455
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