Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq27008 102 6e-17 seq9095 102 6e-17 seq52194 100 2e-16 seq21475 95.1 9e-15 seq133270 91.5 1e-13 seq58137 91.5 1e-13 seq89413 84.2 2e-11 >seq27008 Length=12848 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20099 ACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAA 20158 || || || || || || || |||||||| ||| ||| ||| | || ||||| Sbjct 4262 ACCTTCTGGACGTACTCTCGGCCTTTGACCAGCTGCACGTAGGCGCACCGGTCGAACCAG 4321 Query 20159 CGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAA 20218 || ||||| || ||||| || | ||| || || ||||| || || || ||||| | || Sbjct 4322 CGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTGAGCCCGCCGTCACAG 4381 Query 20219 TAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCA 20278 || || ||| |||||| ||||| | || || | |||||||||||||| | ||| Sbjct 4382 TAGAAGCACTTAGTTTTGTCACCCTGGCCGGTGTAGAAGAATCCCGCTTCGGCGAGTTCC 4441 Query 20279 TCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307 || ||| | |||||||| ||||| ||||| Sbjct 4442 TCAGGCTTCTGCTTCATACTGCGAGGCCA 4470 >seq9095 Length=14658 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || | || ||||| || ||||| |||||||| | || ||| | ||| Sbjct 5768 AAGTACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATC 5827 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | || || || ||| | ||||| |||||||| || || | ||||||||||| Sbjct 5828 TTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTATC 5887 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| ||| || | | | | |||||| |||||| ||| | ||||| | Sbjct 5888 TTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGT 5947 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||||| |||| ||| |||||||| ||||||||| Sbjct 5948 TTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 5981 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || | || ||||| || |||||||||||||| | | ||| | ||| Sbjct 5084 AAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATC 5143 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | |||||| || || | ||||| || ||||| || ||| | || |||||||| Sbjct 5144 TTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATC 5203 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| |||| || || | | ||| |||||| ||||| ||||| || || Sbjct 5204 TTGAATTT-TTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAG 5262 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | |||||||||||||||||||| Sbjct 5263 TTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | |||||| || |||||||| || || || ||||| | || ||| Sbjct 4623 AGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGTACGC 4682 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||| ||| || || ||| | || |||||||||||||| || | |||||| Sbjct 4683 CCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCC 4742 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||||| ||| || | | | | || ||| | || ||| | ||| Sbjct 4743 TTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTG 4802 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| || |||| ||| ||||| |||||||||||| Sbjct 4803 ATAGTTTTCCCAGTCAGTGTCTTTACGAAAATTTGCATT 4841 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | || |||||||| ||||||||||| || | | ||| | |||| Sbjct 6225 AGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCT 6284 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| | ||||||||||| ||||| ||| | || || ||||| Sbjct 6285 TCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCC 6344 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| || ||| ||||| ||| | ||||| | Sbjct 6345 TGAATTT-TCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGT 6403 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| ||| ||||| |||||||||||| Sbjct 6404 CTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 6437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || ||||| || ||||| |||||||| | | || | |||| Sbjct 5997 AGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCT 6056 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| | ||||||||||||||||| ||| | ||| || ||||| Sbjct 6057 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGAATGCCCTCTTTATCC 6116 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | ||| || ||| | || ||| | ||||| || Sbjct 6117 TGGATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTT 6176 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| |||||||||||| ||||||||| Sbjct 6177 TTGCCAGTCAGTGTTTTTACAAATATTTGCATT 6209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || || || || || || ||||| | || ||| | |||||||| ||| || || Sbjct 4872 GTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCA 4931 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || |||||||||||||| || | |||||| || || ||| | |||| || Sbjct 4932 GCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCT-TTGCTTT 4990 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | | | |||||| | || ||| | ||| || ||||||| |||| ||| Sbjct 4991 AACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTCAGTGT 5050 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| |||||||||||||| Sbjct 5051 TTTCACAAAAATTTGCAT 5068 >seq52194 Length=4646 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||||| |||||| || || ||||| || || |||||||| | | Sbjct 3890 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 3949 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||| || || || ||||||| | ||||||||| || Sbjct 3950 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 4009 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | || || || | | ||| ||||| ||||| Sbjct 4010 ATTCCTTCCTTATCTTGAATCT-TAGCTTTAACATTTTCAATGGTGTCGGATGGCTCTAC 4068 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || || | |||||| ||||| ||||||||| Sbjct 4069 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 4117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| || || || ||||| ||||||||||| | | || | |||| Sbjct 4366 AGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCT 4425 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| ||||||| | ||||||||| ||| | || || ||||| Sbjct 4426 TCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCT 4485 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | ||| |||||| ||||| ||| | || || | Sbjct 4486 TGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTACTTCCAGAGTTATAGTC 4545 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || ||||| |||||||| Sbjct 4546 TTGCCTGTTAGTGTCTTGACAAATATTTGCAT 4577 >seq21475 Length=13715 Score = 95.1 bits (104), Expect = 9e-15 Identities = 172/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| ||||| || |||| ||| || | || | ||| ||||| |||||||||||||||| Sbjct 11126 GTTA-CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGT 11068 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | || ||| | |||||| | |||||| || ||| |||| | | ||| || || Sbjct 11067 CAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTG 11008 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC 18272 || | ||||||||||| |||| | || || || | | | | ||| ||| || | Sbjct 11007 GTGGAATACCTTCCTTATCTTGGATTT-TAGCTTTTACATTTTCTATAGTATCAGAGGCC 10949 Query 18273 TCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || || | ||| ||| |||| || || | || || || |||||||||||| | | | Sbjct 10948 TCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGA 10889 Query 18333 CTCTTATA 18340 || | ||| Sbjct 10888 CTGTAATA 10881 >seq133270 Length=334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | ||| | || ||||||||||| ||||||||||| | | ||| || ||| Sbjct 199 AAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGTGTACGACCATC 258 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| ||||| ||||||||| | ||||| | |||||||||| || | |||||| || || Sbjct 259 TTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTC 318 >seq58137 Length=8097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | | ||||| |||||| || |||||||||||||| |||||||| | Sbjct 7760 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGA 7701 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||| || || || | || | | ||||||||| || Sbjct 7700 AAGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 7641 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || ||||| | || || || | | ||| ||| || || || Sbjct 7640 AATGCCTTCCTTGTCTTGAATTT-TGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 7582 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | || ||| |||| || || | |||||| ||||| || |||||||| Sbjct 7581 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq89413 Length=986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 91687 GGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGT 91746 ||||||||||| | || | ||||||||||||||||||| |||||||| |||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 91747 ATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCA 91806 || || ||||| || || || || || | || || || || | || ||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 91807 GGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTA 91865 || ||| | ||| || | || || || |||||||| || ||||| ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTA 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378632208283455