Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4562 535 5e-147 seq7375 86.0 8e-12 seq7176 86.0 8e-12 >seq4562 Length=21325 Score = 535 bits (592), Expect = 5e-147 Identities = 1110/1628 (68%), Gaps = 53/1628 (3%) Strand=Plus/Minus Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 21100 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 21041 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 21040 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 20981 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 ||| | || | || | |||||| || | |||||||||||| || || || ||||| | Sbjct 20980 CATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTC 20921 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 20920 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 20861 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 20860 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 20802 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 || || || || |||| ||| || | | || ||| | | || ||||| || Sbjct 20801 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 20742 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 20741 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 20682 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 20681 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 20622 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 20621 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 20564 Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| || | || | | ||| ||| || || ||||| | || Sbjct 20563 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 20511 Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || | || ||| |||||| |||| ||||| || ||||||| || |||||| || Sbjct 20510 GCTGGACTC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGC 20452 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 |||| |||||| |||||||| |||||||| || | | ||| ||| | ||||| | Sbjct 20451 TTCTAGTGCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 20392 Query 62732 GCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62790 || || | | ||| | | | | | |||||| || || | || ||||||||||||| Sbjct 20391 ACTTTCGTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATAC 20333 Query 62791 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62850 | ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| || Sbjct 20332 CAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACAT 20273 Query 62851 CTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 | |||| ||| || | |||| | ||||| ||||| | || || | ||| || Sbjct 20272 CAATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAA 20216 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| ||||| || | ||||||||||| | ||| | || || || || ||||| | Sbjct 20215 AATTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 20156 Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || |||| | || | | ||||| | | ||| ||||||||||| ||||| || | Sbjct 20155 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCTGTGCAAAGATTGCTACATTTAA 20099 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| ||| Sbjct 20098 TAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATG 20039 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 20038 GTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT 19979 Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | ||| || || ||| |||| || ||| ||||| ||| ||| || || ||||| Sbjct 19978 --GTTTTATAAATCGTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCTCC 19921 Query 63203 CCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || || | | | | ||||| |||| |||||||| | ||| || | || | Sbjct 19920 A-AAGCAGTCAGCGAGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTT 19862 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | || Sbjct 19861 TTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTC 19802 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||| || || ||||| ||||| || | ||| | ||| | | || || | ||||| Sbjct 19801 TCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCC 19742 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 | || || || || || || | | || || ||||||||||| || ||||||| |||| Sbjct 19741 AAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATC 19682 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 | || || || ||||| |||||||||||||| | | ||| || || | ||||| || | Sbjct 19681 TGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGC 19622 Query 63502 CGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCT 63557 | | || || || ||| || | || || || || || |||||| || || Sbjct 19621 CAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCA 19566 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||||| |||||||| ||| ||||||| || ||| | || ||||| |||||||| Sbjct 19565 GCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCG 19506 Query 63618 TCGATCAT 63625 || |||| Sbjct 19505 TCTTTCAT 19498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 18225 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 18166 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 18165 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 18106 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 18105 GTTACACCAGAATATATGCC 18086 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| ||||||||||||| |||||||||||||||||| Sbjct 18969 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 18910 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 18909 TTAAAATCTCTATCATAAACAAT 18887 >seq7375 Length=9560 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3667 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3608 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || |||||||||||||||| ||||| || Sbjct 3607 CATATATCTGGATATTGGATTGGGAATATAACGAA 3573 >seq7176 Length=6331 Score = 86.0 bits (94), Expect = 8e-12 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2579 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2636 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2637 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2696 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 2697 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2756 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTT-AAAAAAGCTACGTCTATCG 155488 ||||| | || | ||||| || | || ||||||||| ||| | | | || | Sbjct 2757 CAAAGTTAGTCATTTTAAAGATTATTTGCCCAAAGCATTTCCTAAAGGAGATGACT-TGA 2815 Query 155489 TATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAA 155545 | |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 2816 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 2875 Query 155546 GTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTG 155605 |||||||| |||||| | ||||| |||| | || | | || || | | |||| Sbjct 2876 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 2935 Query 155606 ACTGTTTATA 155615 | || ||||| Sbjct 2936 ATTGCTTATA 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628605523901520