Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4562 527 6e-145 seq7375 136 4e-27 >seq4562 Length=21325 Score = 527 bits (584), Expect = 6e-145 Identities = 1186/1762 (67%), Gaps = 31/1762 (2%) Strand=Plus/Minus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 21071 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAAACCCATTTTC 21012 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || |||||| | || |||| ||| | | || || | Sbjct 21011 CAAGCGTGGAAATGAATCGACGTAAGTTTTCCATAGTTAGGTTTAGCAACATGGATGTTG 20952 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| |||||||| || ||||| || |||||||| | || | || || Sbjct 20951 AAAGATTGACTTTGGTCTATAAAAGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 20895 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 20894 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTTC 20836 Query 37040 AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACAT 37097 ||| | || ||||| ||||| | | | ||| || || || || | || ||||| Sbjct 20835 AATTTCTTGTATAGATCCATTGTTGTATATAATAAGGTTTTTCATATCTTCATCCCACAA 20776 Query 37098 ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 || | | | || ||| || || | || || || |||| ||||||||||| Sbjct 20775 ATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAA 20716 Query 37158 TACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | || | | Sbjct 20715 GACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGA 20658 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGT 37275 ||||| | ||||| ||||| ||||| || ||||| | || ||| | ||| |||||| Sbjct 20657 ATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGT 20598 Query 37276 GTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCAC 37335 | || | | ||| || || ||| ||||| | ||||| || | || |||| Sbjct 20597 TTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCAC 20538 Query 37336 ATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCG 37395 |||||||| || || ||||||| || |||||| | | |||||| || | || Sbjct 20537 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCT 20478 Query 37396 TAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATT 37455 | ||| ||||| ||| ||||||| ||||||||| ||||||| || ||||| || ||| Sbjct 20477 TCTTTTTCAGCTAATTCACAACTAGCTTCTAGTGCACCATAATAAATAGTTTCAAATATT 20418 Query 37456 TGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT-AATATAAACAC 37514 ||| ||| | | | |||||| || || ||| | | ||| | || || | |||| | Sbjct 20417 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAG-ATATTCTCATCAACACAAACGC 20359 Query 37515 ATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGA 37574 ||| |||| ||||||||||| ||||| || ||||||||| || |||| || | | Sbjct 20358 ATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC 20299 Query 37575 TTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTT 37634 ||| || |||||| |||| | ||| || | ||| |||| ||||| | || || || Sbjct 20298 TTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTT 20239 Query 37635 CGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGA 37694 || ||| | | || || | || ||||| |||||| | |||||| | | | | Sbjct 20238 TGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCAACAAACATGTTAAGTGC 20179 Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 || || | || || || || || ||||||||||| | | |||| | || |||||| Sbjct 20178 TATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCTGT 20119 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || ||||| || || |||| || || | ||| ||||||| ||| | ||||||| Sbjct 20118 GCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGC 20059 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||| ||||| | || || || || || || | ||| || || ||||| || ||||| Sbjct 20058 ATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCA 19999 Query 37875 TAAACTTCTTG--CTTTAACGATCGCTTTA---Att-tttttCTTTGTTTCGTATTCTAT 37928 ||| ||||| || | || | | |||| || |||||||| ||| |||| | Sbjct 19998 TAAC--TCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTTC--TTCATATTTGGT 19945 Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 |||||||| | ||| || | | || | || || | || |||| || |||| Sbjct 19944 ATATAATTCTTCAAATTCCT-CTCCAAAGCAGTCAGCGAGGCCAGGACTGTCATGAGGAC 19886 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||| ||| ||| |||||||||||||||| | || |||||| | ||| |||| ||||| Sbjct 19885 ACATGAGACTCCAAACTTCATCTTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATA 19826 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 | ||| ||| | ||| | | ||| |||||| || ||| ||||| |||| | Sbjct 19825 AAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCA 19766 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 || || ||||| || || ||||| || |||| |||||| | | ||| || || | || Sbjct 19765 AGAATTCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTT 19706 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | || || |||| | |||||| | || || ||||| | ||| ||||| || |||| Sbjct 19705 TGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTA 19646 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 |||||| || || || | || | ||| |||| ||||| ||||| || | | Sbjct 19645 GACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTG 19586 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | || ||||| ||||| ||| ||| || ||||| || ||||||||||| ||||||| Sbjct 19585 TATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAA 19526 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| || || || || || || | || | ||||| || | || ||| Sbjct 19525 AAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCC 19466 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 || || | ||| || | |||||| ||||||| | || |||| || |||| Sbjct 19465 GCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCA 19406 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 |||||| || | ||| || ||| || || | || ||||| |||| || || |||| Sbjct 19405 TATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCA 19346 Query 38528 TTAGCATATGTTGTGGTCTTTC 38549 | ||||| ||||| || ||||| Sbjct 19345 TAAGCATGTGTTGAGGCCTTTC 19324 >seq7375 Length=9560 Score = 136 bits (150), Expect = 4e-27 Identities = 170/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 4037 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 3978 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || | || | | Sbjct 3977 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAGAAACGCT 3919 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || |||||| ||||||| | ||| || | Sbjct 3918 CCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGA 3859 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| | ||| || |||| ||||| | |||||||| |||| || Sbjct 3858 TAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATCTGCTAAGTC 3813 Score = 109 bits (120), Expect = 5e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 4845 ATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 4786 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || |||||||| || | || | |||| Sbjct 4785 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGCAATTATACGTTCT 4726 Query 11786 CCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || || | ||||| ||||| | | ||||| || || ||||| || || Sbjct 4725 CCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACA 4666 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| | ||||| || || || ||||| Sbjct 4665 CATGGTAGAGTTTCAATTGCATTGAATAA 4637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467623129878960