Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2
02015-12-17] 153,959 sequences; 293,608,641 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq9095 120 2e-22
seq58137 91.5 1e-13
seq52194 89.7 4e-13
seq21475 87.8 1e-12
>seq9095
Length=14658
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
||||| ||||| | ||| |||||| || | ||| || || |||||||| || | ||
Sbjct 4857 AACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 4916
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||| ||| || || |||||||||| || |||||||| | || | |||||||| ||
Sbjct 4917 TCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC- 4975
Query 43018 CTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076
|||| || |||| || | | | |||||| ||| || || |||| || |||||
Sbjct 4976 CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGT 5035
Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| || || || ||||||||||||||||||||
Sbjct 5036 TTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068
Score = 111 bits (122), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| || ||||| | ||| |||||| || | ||| || || |||||||| || | ||
Sbjct 5541 AAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 5600
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||| ||| || || || ||||||| || |||||||| | || | |||||||| ||
Sbjct 5601 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC- 5659
Query 43018 CTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076
|||| || |||| || | | | |||||| ||| || || |||| || |||||
Sbjct 5660 CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGT 5719
Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| || || || ||||||||||||||||||||
Sbjct 5720 TTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752
>seq58137
Length=8097
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || ||||| || | ||| || ||||| | |||||| || ||
Sbjct 7759 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 7700
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || ||| |||| |||||||| || || || |||||||| || |||||||| | ||
Sbjct 7699 AGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7640
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || || |||| || | ||| || ||| || || ||
Sbjct 7639 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 7580
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || ||||| || || || ||||||||||| || ||||||||
Sbjct 7579 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530
>seq52194
Length=4646
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||||| || || || |||||| | || |||| ||||||||||||||
Sbjct 4386 CTCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCTTCCAGCTGTTTGCCGGCAAA 4445
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|| | || |||||||| | || | ||| ||||| || ||| | || || |
Sbjct 4446 GATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATT 4505
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||||| | ||| || || | |||||||| || || ||||| || || ||
Sbjct 4506 TTCAATGGTGTCAGACGGCTCTACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGAC 4565
Query 43098 AAAAATTTGCAT 43109
||| ||||||||
Sbjct 4566 AAATATTTGCAT 4577
>seq21475
Length=13715
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934
||| || ||||| || |||| | ||| | ||| | ||| |||||||| | ||||
Sbjct 11130 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 11071
Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994
| || |||||||||||| | || || | |||||| || ||||| ||||| || || || |
Sbjct 11070 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 11011
Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054
| | || | |||||| || || ||| |||| || | | | || || |
Sbjct 11010 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 10951
Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|||| || || | || || ||||| || || || || || || ||||||||||||
Sbjct 10950 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 10895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380654007497622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |