Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4562 536 2e-147 seq7375 100 4e-16 >seq4562 Length=21325 Score = 536 bits (594), Expect = 2e-147 Identities = 1097/1615 (68%), Gaps = 27/1615 (2%) Strand=Plus/Minus Query 70781 TTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGAT 70840 ||||||| | ||||| | ||||||||||| | | | ||| | ||| || |||| | Sbjct 21100 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 21041 Query 70841 AGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 70900 ||||||| |||||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 21040 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 20981 Query 70901 AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCC 70960 |||| |||| | || | || || || | || |||||||| || || || ||||| | Sbjct 20980 CATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTC 20921 Query 70961 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 71019 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 20920 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 20861 Query 71020 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA-ATAAT 71075 | |||| | |||| |||| ||| | |||| | || |||||| | || | ||||| Sbjct 20860 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGT-TGTATATAAT 20803 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 ||||| || ||||||| ||| || | | || ||| | | || |||||| | Sbjct 20802 AAGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 20743 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | || Sbjct 20742 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 20683 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | || ||| | || || | |||||| ||||| || |||||||||||||| || | Sbjct 20682 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 20623 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 ||||||| ||| | | ||||||| | || || ||||| || |||| | ||| Sbjct 20622 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 20563 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 ||| || | || || || | || || Sbjct 20562 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGACT 20503 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| |||||| ||||| ||||||||||| |||| ||||||||| || |||| ||| Sbjct 20502 CCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAGTGC 20443 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||||||||||| ||||| || || | | ||||||| | ||||| | || || | Sbjct 20442 ACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTA 20383 Query 71496 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | ||| | | | | | |||||| ||||| | || ||||| |||||||| ||||||| Sbjct 20382 AG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTC 20324 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 | |||||| |||| ||| ||| ||||| || | ||||||| |||||| ||| |||| || Sbjct 20323 TATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTT 20264 Query 71615 TATTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 | || | |||| ||| | | ||||| | || |||| ||| ||||| |||||| Sbjct 20263 TGTTTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCT 20206 Query 71673 CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 || | ||||||| ||| | || | || || || || || || || || |||| Sbjct 20205 GTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT- 20147 Query 71733 AGCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 | || | | ||||| | || || ||||||||||| ||||| || || || || | Sbjct 20146 --CTTCTGAAGTGTATTGCACAACCTCTGTGCAAAGATTGCTACATTTAATAGTGCCAAG 20089 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||||| ||||||||||||| ||||||| ||||||||||| | || | || |||||||| Sbjct 20088 ATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGT 20029 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 || | || | ||||||||| | ||||| | || |||| | | | || | | Sbjct 20028 CTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAA 19969 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT- 71968 || |||||| ||| |||| ||||||||| ||| || || ||||| ||||| | Sbjct 19968 TCGTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCTCCA-AAGCAGTCAG 19910 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | | ||||||| |||| |||||||| | ||| || |||| | | ||||| || Sbjct 19909 CGAGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTTTTTCTACTCTTT 19850 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || || | Sbjct 19849 TCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCT 19790 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | ||||| ||||| || | ||| | ||| | | || || | |||||| || || || | Sbjct 19789 TACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGGCTCTAAAT 19730 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | || || | | || || ||||||||||| || ||||||| ||||| || || || | Sbjct 19729 AAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGT 19670 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 |||| |||||||||||||| | | |||||| || | ||||| || || | || || Sbjct 19669 TATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAG 19610 Query 72269 TTCCACTG-GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 || ||| || | || | || || || |||||| || || || |||||| | Sbjct 19609 AACC-CTGAGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGATTTAGAAA 19553 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||||| ||| ||||||| |||||| | || || || || ||||| || |||| Sbjct 19552 TTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 19498 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 18970 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 18911 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||| | ||| Sbjct 18910 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 18860 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 18225 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 18166 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 18165 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 18106 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 18105 GTTACACCAGAATATATGCC 18086 >seq7375 Length=9560 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 3667 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3608 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || ||||| ||||||| |||||||| ||||| || Sbjct 3607 CATATATCTGGATATTGGATTGGGAATATAACGAA 3573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669847600998840