Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq89413 132 5e-26 seq9095 131 2e-25 seq52194 122 9e-23 seq58137 116 4e-21 seq21475 98.7 1e-15 seq133270 96.9 4e-15 seq136726 82.4 8e-11 >seq89413 Length=986 Score = 132 bits (146), Expect = 5e-26 Identities = 218/309 (71%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 19639 GGTTCGTTCCATGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGT 19696 || |||||||||| |||| |||||||| ||||| |||| || ||||| ||||||| Sbjct 986 GGCTCGTTCCATGAA--GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGT 929 Query 19697 GAATGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGC 19756 | || | ||||||||||| |||| ||| ||| || || || | |||| |||||||| Sbjct 928 GGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGC 869 Query 19757 CCGGGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGT 19816 | || ||| | ||||||||||||||| || ||||| || || | || |||| Sbjct 868 CTTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGT 809 Query 19817 ACAACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACA 19876 | | ||| || | | || ||| | || | ||| ||||| || | | ||||| | Sbjct 808 AGAGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGA 749 Query 19877 CACCCCATTCGACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTT 19934 |||||||||| || ||||| ||||| | | ||| ||| || ||| | |||| | || Sbjct 748 CACCCCATTCTACGAAGTAGGCACCCA-CAACTTTTCC-AGATGTTTGCTTGAACGGCTT 691 Query 19935 ATTGTTTTC 19943 ||| ||||| Sbjct 690 ATTTTTTTC 682 >seq9095 Length=14658 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || |||||| |||||||| | ||||| || || || || || || || | Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 4901 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| ||||| || |||||| | ||||| | ||| ||||| ||||| Sbjct 4902 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGA 4961 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| ||| | | ||| | ||||| | | ||| ||| Sbjct 4962 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5021 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| |||| |||||| || || |||||||| Sbjct 5022 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || |||||| |||||||| | ||||| || || || || || || || | Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 5585 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| ||||| || ||||| | ||||| | ||| ||||| ||||| Sbjct 5586 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 5645 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| ||| | | ||| | ||||| | | ||| ||| Sbjct 5646 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5705 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| |||| |||||| || || |||||||| Sbjct 5706 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 ||||||||||| || ||||||||||| | ||||| || | ||||| || || || || Sbjct 6240 GTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCA-TCTTCTAGCTGCTTTCC 6298 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| | || || | ||||||||| || || || || ||||| || |||||| ||| Sbjct 6299 AGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTT 6358 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | || || ||||| | ||| | |||||||| |||| ||| Sbjct 6359 AACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGTCTTGCCAGTCAGTGT 6418 Query 143167 TTTTACGAATATTTGCAT 143184 |||||||| |||||||| Sbjct 6419 CTTTACGAAAATTTGCAT 6436 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || || || | ||||| || || || || || || || | Sbjct 6438 CCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 6497 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||||||||| || || || | ||||| | ||| ||||| ||||| Sbjct 6498 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 6557 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| ||| |||| | ||| | || || | | ||| ||| Sbjct 6558 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 6617 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || ||||||||||| |||||||| Sbjct 6618 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 6664 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||||| | |||||||| || || || ||||| || | Sbjct 5754 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGAC 5813 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| || || || |||||| | || || | ||| || || ||||| Sbjct 5814 AGTGTGCGTCCA-TCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGG 5872 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| || | | ||| | ||||| | ||| || || Sbjct 5873 AATTCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAAC 5932 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || ||||| |||| ||| ||||| ||||||||||| Sbjct 5933 TTCCAGTGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 5980 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||||||||| || || || || || || ||| | | ||||| ||||| Sbjct 4638 TGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGTACGCCCATCTTCCAGTTGC 4697 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| | ||||| | ||| ||||| ||||| || ||||| ||||| |||||| Sbjct 4698 TTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTA 4757 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | || || | | ||| ||||| | ||| | || || || ||| Sbjct 4758 GCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTCCCAGTC 4817 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||| |||||||| |||||||| Sbjct 4818 AGTGTCTTTACGAAAATTTGCAT 4840 >seq52194 Length=4646 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| |||||||||| ||||| || ||||| |||||||| || Sbjct 4351 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 4410 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || ||||| || ||| |||| |||||||| ||||| || || Sbjct 4411 AAGGTACGTCCA-TCTTCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGG 4469 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || ||||| || ||| || |||| | ||| | ||||| | || ||||| Sbjct 4470 AATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTAC 4529 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | |||||||| || | ||| || || |||||||||||| Sbjct 4530 TTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 4578 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || || |||| || || ||||| || || ||||| || | Sbjct 3890 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 3949 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| |||||||| |||| |||||||| ||||| ||||| Sbjct 3950 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 4009 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | ||| | ||||| | || |||||| Sbjct 4010 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCTACT 4069 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | |||||| || ||||||||||| Sbjct 4070 TCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 4116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||||| | |||||||||||||| ||||| ||||| | Sbjct 3434 CCACCGCGAAGACGAAGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGAC 3493 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | |||||||||||| |||| ||||| || || || || || Sbjct 3494 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 3553 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | ||| | ||||| | || || || Sbjct 3554 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCAACC 3613 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| || || | || || ||||| || |||||| || Sbjct 3614 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCATACCT 3664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||||||||| || || || || | || || ||||| || || ||||| || Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || || || ||||| | || |||||||| ||||| || || Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || || ||| | | ||| | ||||| | |||||| ||| Sbjct 3782 ATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 3841 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || || | ||| ||||| || || |||||| || Sbjct 3842 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCATACCT 3892 >seq58137 Length=8097 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||||||||||| || ||||| || Sbjct 7759 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 7700 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || ||||| | |||| |||||| ||||| ||||| Sbjct 7699 AGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7640 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| ||||| | ||| | || || | ||||| ||| Sbjct 7639 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 7580 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || | |||||| || || || ||||| Sbjct 7579 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7533 >seq21475 Length=13715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || | ||| | ||| ||||| ||||| |||||||| || | Sbjct 11122 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 11063 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| ||||||||||||||| |||||| ||||||||| || || || Sbjct 11062 AATGTACGTCCA-TCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 11004 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||||| ||||| | ||| | || || | || || || Sbjct 11003 AATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCAC 10944 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | || || ||||| |||||||| Sbjct 10943 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 10896 >seq133270 Length=334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||||| || | |||||||||||||| |||||||| || Sbjct 185 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG-- 242 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| ||| ||||| | ||| || || ||| | || |||||||| ||||| |||| Sbjct 243 ATAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAG 302 Query 143076 GTATGCCTTCTTTGTC 143091 | |||||||||||||| Sbjct 303 GAATGCCTTCTTTGTC 318 >seq136726 Length=271 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| || ||||| || || ||||| || || ||||||||||||||||| || |||||| Sbjct 105 CCGAGGTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCG 46 Query 19462 AAGAATTTCCACGTT 19476 ||||||||||| ||| Sbjct 45 AAGAATTTCCATGTT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506038657124880