Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq58137 141 7e-29 seq9095 116 3e-21 seq21475 114 9e-21 seq52194 102 6e-17 >seq58137 Length=8097 Score = 141 bits (156), Expect = 7e-29 Identities = 163/218 (75%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || |||||||| || ||||| || || | | ||||| Sbjct 7744 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCCGTCT 7685 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | |||||||||||||| || ||||| ||||| ||||| Sbjct 7684 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 7625 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| |||||| |||| || |||||| | ||| || || || ||||||||| Sbjct 7624 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 7565 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 ||||| || || ||||| ||||| || ||||| ||||| Sbjct 7564 TTACCCGTAAGTGTTTTCACAAAGATCTGCAT-TTTGA 7528 >seq9095 Length=14658 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | |||||| || | || || || ||||| || || || || Sbjct 5298 CCACCTCTTAGCCGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGAC 5357 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| |||||||||||| | |||| | |||||||| ||| Sbjct 5358 AGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 5417 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| ||| ||||||| ||||| | ||| || Sbjct 5418 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 5477 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || ||||| || ||||||||||||||||| Sbjct 5478 TCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 5524 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || |||||||| | || || || || || || || || || | Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTC--TG 5583 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || |||||| | |||| | |||||| || | Sbjct 5584 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAG 5643 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| ||| |||||| || ||| |||| || || || | ||| Sbjct 5644 GAATGCCTTCTTTGTCCTGAATCTTTGCT-TTAACATTTTCGATTGTGTCAGAAGCTTCC 5702 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 5703 ACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || |||||||| | || || || || || || || || || | Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTC--TG 4899 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || ||||| | |||| | |||||| || | Sbjct 4900 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAG 4959 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| ||| |||||| || ||| |||| || || || | ||| Sbjct 4960 GAATGCCTTCTTTGTCCTGAATCTTTGCT-TTAACATTTTCGATTGTGTCAGAAGCTTCC 5018 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 5019 ACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | ||| | ||||| || || ||||| || || || || || | Sbjct 4614 CCACCTCTAAGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTC--TG 4671 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| ||||| | ||| || ||||| | |||| | |||||| || | Sbjct 4672 ACAATGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAG 4731 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| |||||| ||| ||| ||||||| ||||| | ||| | Sbjct 4732 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 4791 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || ||||| || ||||| || ||||| ||||||||||| Sbjct 4792 CTTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACGAAAATTTGCAT 4840 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||||||| | || || || || || |||||||| || | Sbjct 5070 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAT 5129 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| |||||| | || | | |||||||| ||| Sbjct 5130 AGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGA 5189 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || |||||| ||| || ||| |||| || || || | || || Sbjct 5190 ATCCCCTCCTTATCTTGAATTTTTGCT-TTAACATTTTCAATTGTGTCAGAAGGCTCAAC 5248 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| |||||||| || || |||||||||||||||||||| Sbjct 5249 TTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | || |||| || | || || ||||| || ||||||||||| | Sbjct 6210 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 6269 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||| || || ||||| | || | | ||| || || ||| Sbjct 6270 AGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 6329 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || |||||| ||| || ||| |||| || ||||| | || || Sbjct 6330 ATTCCCTCTTTATCCTGAATTTTCGCT-TTAACATTTTCAATTGTATCAGAAGGCTCAAC 6388 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 6389 TTCTAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 6436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | || || | ||| | || || || || || || ||||| || | Sbjct 5982 CCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 6041 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || || ||||| | || | | |||||| || ||| Sbjct 6042 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGA 6101 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||||| ||| ||| |||| || ||||| | ||| || Sbjct 6102 ATGCCCTCTTTATCCTGGATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 6161 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || ||||| ||||||||||| |||||||| Sbjct 6162 TCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATATTTGCAT 6208 >seq21475 Length=13715 Score = 114 bits (126), Expect = 9e-21 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224 ||||| || ||||| |||||||| || | ||| || | ||||||| |||||| | Sbjct 11092 GTGGATTCCTTTTGAATGTTGTAGTCAG--ACAATGTACGTCCATCTTCTAGTTGTTTAC 11035 Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283 |||| | ||||||||||| ||||| |||||| ||||| || || ||||| ||| Sbjct 11034 CAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCT- 10976 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| ||||||| ||||| || || || | ||||||||||||||| || || Sbjct 10975 TTTACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGG 10916 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 10915 GTCTTGACGAAAATTTGCAT 10896 >seq52194 Length=4646 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || || ||||| || || | | | ||||| Sbjct 3908 ACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 3967 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | || | ||||||||| || ||||||||||| || || | Sbjct 3968 AGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 4027 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| |||| ||||| ||| ||||| || || || || ||||| Sbjct 4028 ATCTTAGCT-TTAACATTTTCAATGGTGTCGGATGGCTCTACTTCCAAAGTTATTGTTTT 4086 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 4087 TCCAGTAAGTGTTTTGACAAATATTTGCAT 4116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | |||||||||||||| || || ||||| |||||||| || | Sbjct 4351 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 4410 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | |||||||| || | || | ||||||||| || ||| Sbjct 4411 AAGGTACGTCCATCTTCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 4470 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||| || ||||||| |||| ||||| || ||||| Sbjct 4471 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTACT 4530 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || || ||||| || || || ||||| ||||||||| Sbjct 4531 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCATA 4578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361499615890419