Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq89413 123 2e-23 seq9095 100 2e-16 seq27008 98.7 8e-16 seq133270 86.0 5e-12 seq58137 82.4 6e-11 >seq89413 Length=986 Score = 123 bits (136), Expect = 2e-23 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 101024 GGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGA 101083 ||||||||||||| |||| || ||||| |||||||||| ||| ||||| |||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 101084 ATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCG 101143 || | ||||||||| || ||| || | ||||| ||||| || |||| |||||||| Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 101144 GGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTAC 101203 || ||| | || |||| |||||| ||||||||||| || || || ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 101204 AACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACG 101263 | || || | ||||| || | || | ||||| || || || | || || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 101264 CCCCACTCTACAAAATACGCA 101284 ||||| ||||| || || ||| Sbjct 746 CCCCATTCTACGAAGTAGGCA 726 >seq9095 Length=14658 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| || || ||||| |||||||| | Sbjct 6208 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 6267 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 6268 ATAGTGT----GCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 6323 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 6324 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 6383 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 6384 TCAACTTCTAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 6437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || |||| ||||| ||||| ||||| ||||||||||| || | Sbjct 5980 TTCCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 6039 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || |||||| || ||||| || || ||| |||||||||| || ||||| Sbjct 6040 ATAGAGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCT 6095 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||||||| || |||||| || || | | | ||||| || Sbjct 6096 GGGGGAATGCCCTCTTTATCCTGGATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 6155 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || ||||| || || | ||||| ||||| ||||||||| Sbjct 6156 TCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATATTTGCATT 6209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| ||||||||||| || ||||| || || | || ||| | || Sbjct 6453 AACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 6512 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 6513 TCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 6572 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||||| | ||| ||||| || ||| ||| | || |||||| Sbjct 6573 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 6632 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || || ||||||||||| || || |||||||| | ||||| Sbjct 6633 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCT 6673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||||| ||||||||||| || ||||| || || | || ||| | || Sbjct 4857 AACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCT 4916 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| || || || ||| |||| ||||| || ||||| || | ||| |||||||| Sbjct 4917 TCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCC 4976 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | ||| || || || ||| ||| | |||||| ||| Sbjct 4977 TGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTT 5036 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||||| |||||||||||||| Sbjct 5037 TTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||||||||| || ||||| || || | || ||| | || ||||| || Sbjct 5550 TGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGC 5609 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || |||| ||||| || ||||| || | ||| |||||||| ||| || Sbjct 5610 TTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTTT 5669 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| || || || ||| ||| | |||||| ||||| || || Sbjct 5670 GCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAATAGTTTTGCCAGTC 5729 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||| |||||||||||||| Sbjct 5730 AGTGTTTTCACAAAAATTTGCAT 5752 >seq27008 Length=12848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| || || || || || ||||||||||| Sbjct 4643 CGCAGGAAGGGGCACTGGGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 4702 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 4703 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 4762 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 4763 TAATAGAAGCCATT 4776 >seq133270 Length=334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 || |||| || ||||| ||| | ||||| | ||||||||| || | |||||||||| Sbjct 29 TCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTG 88 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || |||||| |||||| | | | |||||| || ||| ||| | ||||||| Sbjct 89 TCTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATG 148 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||| ||||| |||||||| ||||| Sbjct 149 GTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 183 >seq58137 Length=8097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||||||||| || | | || |||| Sbjct 7744 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCCGTCT 7685 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || |||| | | || ||||| || | ||| || ||||| Sbjct 7684 TCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 7625 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| |||||| | | | ||||||| ||| || ||| | ||||||||| Sbjct 7624 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 7565 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT-AAATCTCTTATAAA 19058 ||||| || | ||||| ||||| || |||||||| | |||| | | ||| Sbjct 7564 TTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGATATCTGTAACAAA 7515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413794905832846