Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq58137 129 4e-25 seq9095 104 1e-17 seq21475 96.9 2e-15 >seq58137 Length=8097 Score = 129 bits (142), Expect = 4e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || |||||||| |||||||| ||||| | || || | Sbjct 7747 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCCG 7688 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||||||| || || |||||||| || || | || |||||||| || Sbjct 7687 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 7628 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || ||| |||| ||| |||| ||| || Sbjct 7627 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 7568 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||| |||||||| ||||| || || || ||||| || || Sbjct 7567 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 7527 >seq9095 Length=14658 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| |||||||| |||||||| || ||||| || || ||||| || || ||| Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 4901 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || |||| |||||||||| ||| || | | ||| || || | || Sbjct 4902 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGA 4961 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||||||||| || |||| ||| || ||| || ||||| | || || Sbjct 4962 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5021 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || || ||||| || ||||||||||| Sbjct 5022 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| ||||| || |||||||| || ||||| || || ||||| || || ||| Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 5585 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || |||| |||||||||| || || | | ||| || || | || Sbjct 5586 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 5645 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||||||||| || |||| ||| || ||| || ||||| | || || Sbjct 5646 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5705 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || || ||||| || ||||||||||| Sbjct 5706 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||| | || | ||||| || || ||||| || || ||||||||||| Sbjct 6210 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 6269 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || | ||||||||| ||| || | | |||||| || | ||| Sbjct 6270 AGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 6329 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || ||| | ||| || ||| ||| || || || | ||| Sbjct 6330 ATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACT 6389 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || || || || || || || ||||||||||||||||| Sbjct 6390 TCTAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 6436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || ||||| || || ||||| || || ||||| || | Sbjct 6450 CGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCA 6509 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || | | ||| || || | || |||||||| || Sbjct 6510 TCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTG 6569 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| ||||| ||| || || || | || || |||| || Sbjct 6570 TCTTGAATCTTTGCC---TTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTG 6626 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || | |||||||||||| ||||||||| Sbjct 6627 ATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 6665 >seq21475 Length=13715 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||||||||| || || ||||| || ||||| |||||||| | || || || Sbjct 11105 CACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTC 11046 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 | ||| || ||| ||| || |||||||||||||| | || || ||||| || || Sbjct 11045 TAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTG 10986 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | || |||||| ||| || || || || | || || || || || || Sbjct 10985 GATTTTAGC---TTTTACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGT 10929 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||||||| || || |||||||||||||| Sbjct 10928 TTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 10896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318179453581182