Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq58137 98.7 8e-16 seq9095 98.7 8e-16 seq89413 93.3 4e-14 seq133270 87.8 2e-12 >seq58137 Length=8097 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| ||||| || || |||||||||||||| || ||||| || Sbjct 7761 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAG 7702 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | || ||||||||||| || || || |||| | | |||||||| | Sbjct 7701 AAAGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 7642 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| || |||| |||||| Sbjct 7641 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 7582 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| ||||||||||| || || | ||||| ||||| || |||||||| Sbjct 7581 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq9095 Length=14658 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || | |||||| ||||| | ||||| || || || || || || || Sbjct 4840 TTCCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTG 4899 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||||| ||| || || ||| |||| || || |||||||| | Sbjct 4900 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAG 4959 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| ||| ||| ||| || | | | | || || |||| Sbjct 4960 GAATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCA 5019 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | |||||| |||||||| |||| ||||| |||||||||||||| Sbjct 5020 CTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || ||||||| |||||||| || || |||||||| || ||||| | | ||||| Sbjct 5088 ACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTG--ATAGTGTGCGTCCATCTT 5145 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | | |||||| || || |||||||||||||||| || ||| | || || || || Sbjct 5146 CAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTT 5205 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||||| ||| || | ||| | || ||| || ||| | ||||| |||| Sbjct 5206 GAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTT 5265 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | |||||| |||||||||||||| Sbjct 5266 TACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || | ||| || ||||| | ||||| || || || || || || || Sbjct 5524 TTCCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTG 5583 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||||| ||| || || || |||| || || |||||||| | Sbjct 5584 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAG 5643 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| ||| ||| ||| || | | | | || || |||| Sbjct 5644 GAATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCA 5703 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | |||||| |||||||| |||| ||||| |||||||||||||| Sbjct 5704 CTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 >seq89413 Length=986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 101714 GGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGG 101773 ||||||||||| | ||| | ||||| || |||||||||| ||| ||||| ||||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 101774 ATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCG 101833 || | ||||| || || |||||| || || || || | |||| ||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 101834 GGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTAC 101893 || ||| | || || | ||| || ||||| ||||| || || || ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 101894 AACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACG 101953 | ||| || | || || || | || | || || || || || | | ||| || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 101954 CCCCATTCTACAAAATACGCA 101974 ||||||||||| || || ||| Sbjct 746 CCCCATTCTACGAAGTAGGCA 726 >seq133270 Length=334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 |||||||||||| || || ||| | ||||| | ||| ||||| || | ||| ||||| Sbjct 28 ATCTTCCAATTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTT 87 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 ||| |||||| ||| || | ||| || ||| |||||| ||||| |||||| Sbjct 88 GTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAAT 147 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || || | ||||| |||||||| ||||| Sbjct 148 GGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAATTGTTTGC 20069 |||||||||||||| |||||||| || ||||| | || |||||| ||||| |||| Sbjct 215 GTAGATTCTTTTTGGATGTTGTAGTCAG--ATAGTGTACGACCATCTTCTAATTGCTTGC 272 Query 20070 CCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||||||| | |||||||| || | |||||||||||| Sbjct 273 CCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418799896936479