Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9095 140 3e-28 seq18220 138 1e-27 seq89413 131 1e-25 seq4562 105 6e-18 seq58137 96.9 3e-15 >seq9095 Length=14658 Score = 140 bits (154), Expect = 3e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||| ||| | |||||| | ||||| || || Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| ||||||| |||||||||||||| ||||| |||||| Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 || |||||||||| | || |||||||| ||||||| | | |||| || |||| Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCA--GACTATA 4891 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || || || || ||||| | ||||||||||| | | ||||| ||| Sbjct 4890 ATATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGGA 4841 Score = 140 bits (154), Expect = 3e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||| ||| | |||||| | ||||| || || Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| ||||||| |||||||||||||| ||||| |||||| Sbjct 5692 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 5633 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 || |||||||||| || || |||||||| ||||||| | | |||| || |||| Sbjct 5632 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCA--GACTATA 5575 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || || || || ||||| | |||||||| || | | ||||| ||| Sbjct 5574 ATATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGA 5525 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| |||||||| ||| | || || | ||||| || || Sbjct 6664 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 6605 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||||| ||||| |||||||| ||||| |||||| Sbjct 6604 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6545 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 || |||||||||| || ||| |||||||||||||||| | | |||| || |||| Sbjct 6544 CAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCA--GACTATA 6487 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | || || || || ||||| | || || ||||| Sbjct 6486 ATATCCAGAAGGAGTCTACTTTGCACTTGGTGTT 6453 Score = 102 bits (112), Expect = 7e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||| ||| | ||||| | ||||| ||| | Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 5237 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||| ||| || || || || || || || || ||| Sbjct 5236 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 5177 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||||| || |||| || || || ||||| |||||| ||| | || ||| || || | Sbjct 5176 CAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTATCA--GACTACA 5119 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || |||||||| | |||||||| | | ||||||| || Sbjct 5118 ACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||| ||| | ||||| ||| | || || | ||||| || || Sbjct 4841 AATGCAAATTTTCGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 4782 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || || ||| ||||| ||||| || ||||| ||||| Sbjct 4781 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 4722 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTAT 24167 ||| |||||||||| | || |||||||| ||||||| | | ||||| | ||| Sbjct 4721 ACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAG--ACTAT 4664 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGA 24227 || || || ||||||||||| |||| | || | ||| | ||||| || | ||| | Sbjct 4663 AATATCCAGAAAGAATCTACTCTTCACCTTGTTCTCAGACTTAGAGGTGGTGTGTAAAG- 4605 Query 24228 TTCTT 24232 ||||| Sbjct 4604 TTCTT 4600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||| ||| | ||||| || | || || | ||||| ||| | Sbjct 6437 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTC 6378 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || ||||| || || || || ||||| Sbjct 6377 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 6318 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168 || ||||| |||| | || ||||| || ||||||| || | || | ||||| | Sbjct 6317 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACAC-TATCTGATTACA 6259 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||| ||||||||||| | || |||| || | ||||||| ||| Sbjct 6258 ACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGA 6209 >seq18220 Length=5896 Score = 138 bits (152), Expect = 1e-27 Identities = 224/319 (70%), Gaps = 5/319 (2%) Strand=Plus/Minus Query 56481 GCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCG 56540 |||||||| ||| | ||| ||||||| ||||||| ||||| || || || || ||||| Sbjct 5887 GCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCA 5828 Query 56541 AATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACAC 56600 ||| ||| || |||| ||| | |||||||||||||||| ||||| || ||| Sbjct 5827 AATGATACTCTAGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACT 5768 Query 56601 TATACGACCGATTTTGCGGTTCG-TGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGAT 56659 || || | || || | || | || |||| || ||| | ||| ||||| Sbjct 5767 TACACATCTGACTTCGGAGTAAAATACT-TGCTGGCGCAGGGAGTGAATCCTAAGAAGAT 5709 Query 56660 TGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAA 56719 |||||| || || |||||||| ||||| || ||||| || || ||||| | ||||| Sbjct 5708 TGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGTGTTCATGATTACAAAGACAA 5649 Query 56720 AAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGT 56779 || ||| || | |||| || | |||||||||||||| || ||| |||||||||| Sbjct 5648 ---CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGT 5592 Query 56780 CGTTGATTTTAGAGAAATT 56798 ||||| | || || ||| Sbjct 5591 GGTTGACTACAGGGAGATT 5573 >seq89413 Length=986 Score = 131 bits (144), Expect = 1e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 55830 GCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACT 55889 || || || || || |||||||| |||| ||| || || || || ||| | || | Sbjct 727 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTAGATCGTATACCTATA 786 Query 55890 CCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAAC 55949 |||||||| | ||| | |||||||| || || || || |||||||| |||||||| || Sbjct 787 CCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAAT 846 Query 55950 GACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGA 56009 || ||| | || ||| || ||||| |||| || ||||| || ||| || || Sbjct 847 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 906 Query 56010 GACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAA 56069 || ||||||||||| || || || || || ||||| || | ||||| || |||||| | Sbjct 907 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 966 Query 56070 GTGACCGCATGGAACGAACC 56089 || | |||||||||| || Sbjct 967 TTGTCTTCATGGAACGAGCC 986 >seq4562 Length=21325 Score = 105 bits (116), Expect = 6e-18 Identities = 337/515 (65%), Gaps = 11/515 (2%) Strand=Plus/Minus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTA 132256 ||||| || || |||| || |||| || ||||||||||||| | ||| | ||| Sbjct 20750 AGATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGAT 20691 Query 132257 GTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATG 132316 ||||| || || || ||||| |||| || | ||||| || || | || |||||||| Sbjct 20690 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 20631 Query 132317 TAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCC 132376 || ||||||| |||||||||| || ||| | || || | |||||| | || Sbjct 20630 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCC 20571 Query 132377 CAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTA 132436 |||| ||| || || | | ||| | | ||||| |||| |||| | ||| Sbjct 20570 CAGTCCCAAAGGTCTGTAG---GAGTTTTGTCCCACATATCATACTGGAGGATACCTTGG 20514 Query 132437 CTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTC 132496 ||||| ||| || | ||| | |||||| || | | || || | ||| || Sbjct 20513 CTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACT- 20455 Query 132497 TGACTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTG 132555 | || || ||||||||||||||||| || | |||| | ||| | |||||| Sbjct 20454 AGCTTCTAGTGCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTT 20395 Query 132556 TTGACTGTCGTAGGGCAAATT-TAA--AATAGCGAACGCATCGGCAAGTCCCTGAATGCC 132612 | ||| ||||| | | ||| | | || | | |||||||| || | ||||||| || Sbjct 20394 CTCACTTTCGTAAG--ATATTCTCATCAACA-CAAACGCATCTGCCATGCCCTGAACACC 20338 Query 132613 GATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTT 132672 ||||| || ||||||||| | | ||| || || ||| || | |||||||| || Sbjct 20337 AATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATT 20278 Query 132673 TTTGTCTATTATTTTATTGAGATTGTTAGTGACAA 132707 || || | ||| || | ||| | ||| |||| Sbjct 20277 AACATCAATAACTTTGTTTAAATTTTGAGTTACAA 20243 >seq58137 Length=8097 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| |||||| | || || ||| | ||||| | ||||| || | Sbjct 7529 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 7588 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || || || | || ||| || ||| ||||| |||||||| ||||| || Sbjct 7589 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 7648 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||||| || || |||||| | ||||| | | | | | || || Sbjct 7649 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTA 7708 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||||||||||||||| |||| || || || Sbjct 7709 CAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429129278703645