Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq133270 96.9 3e-15 seq89413 96.9 3e-15 seq52194 89.7 4e-13 seq58137 86.0 5e-12 seq16356 84.2 2e-11 >seq133270 Length=334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 16754 ATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGC 16813 ||||||||||| | || ||| | || |||||||| || || ||| | ||||| ||| Sbjct 2 ATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCGGCAAAGATAAGACGC 61 Query 16814 TGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAG 16871 || || || ||| | |||||||||||| ||||| ||| || || | | | || Sbjct 62 TGCTGATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATAG 119 Query 16872 TGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCT 16931 | || ||| ||| ||||| ||| ||||| ||||| || || ||||| |||||||||| Sbjct 120 TATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCT 179 Query 16932 GCAT 16935 |||| Sbjct 180 GCAT 183 >seq89413 Length=986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 96744 GGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGA 96803 ||||||||||| | ||||| || ||||| |||||||||| ||| ||||| || ||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 96804 ATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCG 96863 || | ||||| || || |||||| || || || || || |||| ||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 96864 GGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTAC 96923 || ||| | ||| || | |||||| ||||| ||||| || ||||| ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 96924 AACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACACG 96983 | ||| || | | || || | || | || || || || || | | ||| || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 96984 CCCCATTCCACAAAATACGCA 97004 |||||||| || || || ||| Sbjct 746 CCCCATTCTACGAAGTAGGCA 726 >seq52194 Length=4646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| || || |||||||| || || || |||||||| | | Sbjct 3890 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 3949 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| || || || | ||||| || ||||| || ||| Sbjct 3950 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 4009 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| | ||| || || | | | |||||| ||||| Sbjct 4010 ATTCCTTCCTTATCTTGAATCTTAGCT--TTAACATTTTCAATGGTGTCGGATGGCTCTA 4067 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| || || ||||||||||| || |||||| Sbjct 4068 CTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 4117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | Sbjct 4351 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 4410 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| |||||||| ||| | ||||| || ||||| || || Sbjct 4411 AAGGTACGTCCATCTTCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 4470 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||| | ||| || | | | ||||| ||||| | Sbjct 4471 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTACT 4530 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || || || || |||||||| || ||||| Sbjct 4531 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 4577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||||| || || || ||||| ||||| || || | || || | | ||| Sbjct 3449 AGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGACAGAGTGCGGCCATCC 3508 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || || ||||||||||| || | |||||| ||||| Sbjct 3509 TCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 3568 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| ||||| |||| ||||||| Sbjct 3569 TGGATCTTAGC--CTTAACATTTTCGATAGTGTCGGATGGCTCAACCTCCAAAGTGATGG 3626 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || || || || |||||||| Sbjct 3627 TCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 >seq58137 Length=8097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || || || || ||||| || |||||||| | Sbjct 7759 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 7700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||||||| || || || |||| | || ||||| || ||| Sbjct 7699 AGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7640 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| || || | | | ||| ||| || || Sbjct 7639 ATGCCTTCCTTGTCTTGAATTTTGGCT--TTTACATTTTCAATAGTATCGGAAGGTTCAA 7582 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || |||||||| || || || ||||| ||||| |||||||||||| Sbjct 7581 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTG 7529 >seq16356 Length=5361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 |||||||| |||||||| || |||| | |||||| | || |||| ||||||||| Sbjct 293 GGCGGCGTAGGGCTGAACCTGTGCGGCGCGAGCCACCTGCTGCTGCTGGACCCGCACTGG 234 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG 29454 ||||||||| ||||| |||||| |||| |||| | |||| |||| ||| Sbjct 233 AACCCGCAGCTGGAGGAGCAGGCACAGGACCGCGTGTACCGCGTGGGGCAG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404327902877410