Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4562 524 1e-143 >seq4562 Length=21325 Score = 524 bits (580), Expect = 1e-143 Identities = 1102/1621 (68%), Gaps = 39/1621 (2%) Strand=Plus/Minus Query 61830 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 61889 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 21100 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 21041 Query 61890 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 61949 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 21040 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 20981 Query 61950 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62009 ||| | || | || | |||||| || | |||||||||||| || || || ||||| | Sbjct 20980 CATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTC 20921 Query 62010 TGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62068 | || || ||||| | ||| || || ||| ||| ||||| | ||||| || || | Sbjct 20920 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 20861 Query 62069 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62125 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 20860 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 20802 Query 62126 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185 || || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 20801 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 20742 Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 20741 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 20682 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 20681 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 20622 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62363 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 20621 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 20564 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62422 |||| || | || || || ||||| | || || | || Sbjct 20563 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 20504 Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||| | Sbjct 20503 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAGT 20445 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||||| |||||||| ||||| || || | | ||| ||| | |||| | || || Sbjct 20444 GCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 20385 Query 62543 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 20384 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 20326 Query 62602 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62661 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 20325 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 20266 Query 62662 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62718 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 20265 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 20209 Query 62719 TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 || || | ||||||||||| | ||| | || || || || || || || || || Sbjct 20208 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 20149 Query 62779 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 62835 || | || | | ||||| | | ||| ||||||||||| ||||| || || || || Sbjct 20148 AT---CTTCTGAAGTGTATTGCACAACCTCTGTGCAAAGATTGCTACATTTAATAGTGCC 20092 Query 62836 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 62895 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 20091 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 20032 Query 62896 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 62955 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 20031 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTT 19974 Query 62956 GTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 || || ||| |||| || ||| ||||| ||| ||| || || ||||| || || Sbjct 19973 ATAAATCGTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCTCCA-AAGCA 19915 Query 63014 TTGTCC-AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63072 | | || ||||||| |||| |||||||| | ||| || | || | | || Sbjct 19914 GTCAGCGAGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTTTTTCTAC 19855 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||| Sbjct 19854 TCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTC 19795 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 || || ||||| ||||| || | ||| | ||| | | || || | |||||| || || Sbjct 19794 TTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGGCTC 19735 Query 63193 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63252 || || || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 19734 TAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGT 19675 Query 63253 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGAT 63312 || ||||| |||||||||||||| | | |||||| || ||||| || || | || Sbjct 19674 ATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTAT 19615 Query 63313 ATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63368 || || ||| || | || || || || || |||||| || || || || Sbjct 19614 GTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATT 19559 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 |||| |||||||| ||| ||||||| |||||| | || || || || ||||| || ||| Sbjct 19558 TAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCA 19499 Query 63429 T 63429 | Sbjct 19498 T 19498 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 18970 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 18911 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 18910 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 18860 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 18225 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 18166 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 18165 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 18106 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 18105 GTTACACCAGAATATATGCC 18086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632412583136400