Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9095 154 1e-32 seq21475 134 1e-26 seq52194 116 3e-21 seq133270 105 6e-18 seq58137 105 6e-18 seq35452 95.1 1e-14 >seq9095 Length=14658 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||| || ||| | ||||| | |||||||| | || Sbjct 5525 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 5466 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | ||| | |||| ||| ||||| ||||| ||||| || |||| Sbjct 5465 TGATACAATAGAAAATGTTAAGGCTAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACC 5407 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | ||||| || |||||||| ||||||||| |||||| || || || | Sbjct 5406 AACAGAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATA 5347 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || | || ||||| || |||||||||| || Sbjct 5346 ATATTCAAAAGGAATCTACTTTGCACTTAGTTCTGCGGCTAAGAGGTGG 5298 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||||||||| |||| || ||| | |||||| | ||||| ||| | || Sbjct 5981 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACACTGGAAGTTGAGCCCTC 5922 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| ||||| | ||| | |||| ||| || || ||||| ||||| || |||| Sbjct 5921 TGACACAATCGAAAATGTTAAGGCCAAAATTCAA-GATAAGGAAGGAATTCCTCCAGACC 5863 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||||||||| || || || | ||||||| ||||| || || |||| Sbjct 5862 AACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGTCTGACTACA 5803 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || |||||||||| || | || ||||| || Sbjct 5802 ATATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5754 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || |||| || ||| | |||||| | |||||||| | || Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || | ||| |||||| || ||||| || ||||| || || || Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||||||||| || || || | ||||||| |||||| | || ||||| Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || ||||| || | ||| | || ||| |||| ||||| |||| Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTACGGCTGAGAGGTGGAA 5980 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || ||| | || || | |||||||| | ||| Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || ||||||| | ||| ||||||||||| ||||| ||||| Sbjct 5008 GACACAATCGAA--AATGTTAAAGCAAAGATTCAG-GACAAAGAAGGCATTCCTCCTGAT 4952 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || || ||| | ||||||| ||||| || || || Sbjct 4951 CAACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTAT 4892 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || | ||||||||| | | |||||||| |||| Sbjct 4891 AATATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGGAA 4840 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || ||| | || || | |||||||| | ||| Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || ||||||| | ||| ||||||||||| ||||| ||||| Sbjct 5692 GACACAATCGAA--AATGTTAAAGCAAAGATTCAG-GACAAAGAAGGCATTCCTCCTGAT 5636 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| || || || ||| | ||||||| ||||| || || || Sbjct 5635 CAACAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTAT 5576 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || | |||||||| | | |||||||| |||| Sbjct 5575 AATATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGAA 5524 >seq21475 Length=13715 Score = 134 bits (148), Expect = 1e-26 Identities = 176/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | || |||||| |||| || |||| |||||| | Sbjct 10893 ACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCC 10952 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| ||||| || | || |||| |||||| || || ||||| |||||||| Sbjct 10953 TCTGATACTAT--AGAAAATGTAAAAGC-TAAAATCCAAGATAAGGAAGGTATTCCACCA 11009 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| || || | || ||||| || |||||| ||||||||| || || || || Sbjct 11010 GACCAGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGAC 11069 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTAT 25232 ||||| |||||||| |||||||| | ||| | ||||| | || | ||||| || ||| Sbjct 11070 TACAACATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGGTAACTAT 11129 Query 25233 T 25233 | Sbjct 11130 T 11130 >seq52194 Length=4646 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || ||||||| | || || ||| | || Sbjct 3660 ATGCAGATCTTCGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTTGAGCCATCC 3601 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 3600 GACACTATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 3541 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| || || |||| |||||| || ||||| || Sbjct 3540 CAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGATTATAAC 3481 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | |||||||| || Sbjct 3480 ATCCAAAAAGAATCTACCTTGCATTTAGTACT 3449 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | || || | ||||| ||| ||||| Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCT 4518 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| || ||||| || ||||| || || || Sbjct 4517 GACACCATTGAAAATGTAAAGGCTAAGATTCAA-GATAAAGAGGGTATTCCCCCAGATCA 4459 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| |||||||||||||| | ||||||| || || | || ||||| Sbjct 4458 ACAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAA 4399 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || |||||||| || Sbjct 4398 CATCCAAAAGGAGTCTACCCTTCATTTAGTACT 4366 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | |||||| | ||||| || | || Sbjct 3888 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 3829 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || | || |||| || | || |||||||| || ||||| || || Sbjct 3828 GACACTATTGAA--AATGTTAAAGCCAAGATCCAA-GACAAAGAGGGAATTCCCCCAGAT 3772 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || ||||| || | || |||| ||| ||| | || ||| Sbjct 3771 CAACAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTAC 3712 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| ||||| | || || || || | || ||||||| Sbjct 3711 AATATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 3662 Score = 102 bits (112), Expect = 7e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || | || || ||| | || || | ||||| ||| | || Sbjct 4117 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTAGAGCCATC 4058 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | ||| || || ||||| ||||| || || Sbjct 4057 CGACACCATTGA--AAATGTTAAAGCTAAGATTCA-AGATAAGGAAGGAATTCCTCCAGA 4001 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || |||| || || || || ||| | ||||||| ||||| || || || Sbjct 4000 TCAACAACGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTA 3941 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| ||||| || || || || || | || ||||||| Sbjct 3940 CAATATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 3890 >seq133270 Length=334 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||||||||| ||||| || || ||||| || |||||||||| ||||| Sbjct 327 AAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAACGTCTTATTTTTGCGGGCAAG 268 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| ||| || | || ||||| || ||||||||||| || | || Sbjct 267 CAATTAGAAGATGGTCGTACACTATCTGACTACAACATCCAAAAAGAATCTACTTTGCAC 208 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || | ||||||| || Sbjct 207 TTAGTACTTCGTTTAAGAGGTGG 185 >seq58137 Length=8097 Score = 105 bits (116), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || |||||| |||| || | ||||| || | || Sbjct 7532 AATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCTTC 7591 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| |||| ||| ||||| ||||| ||||| || || Sbjct 7592 CGATACTATTGAA--AATGTAAAAGCCAAAATTCAA-GACAAGGAAGGCATTCCTCCAGA 7648 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||| || || || ||||| ||||| | ||||| | || || Sbjct 7649 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTA 7708 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||| || || || || || Sbjct 7709 CAATATTCAAAAAGAATCTACTCTTCACTTGGT 7741 >seq35452 Length=10678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 51090 ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGC 51149 ||| |||||| |||||||| | || || || ||||||||||| || | | || || Sbjct 9932 ACCAACATAACCATTAGGATCTCTGCCGTCAACACTGTAATGATCATTCAAGTAAATAGC 9991 Query 51150 ATAACCCAATGCCATGTCTGCACTAG-GCGTCCATTCCATAATTTTCTTGGCCCAGTACA 51208 | | ||| ||| ||| | | | | |||||||| | ||| |||||| |||||||| Sbjct 9992 AAACTTCAAAGCC-TGTTCGGGCGACTGGGTCCATTCTAAAATCTTCTTGCACCAGTACA 10050 Query 51209 TGCGCATGTAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCA 51266 |||| | | |||| |||||||||||||| || | || || |||||| |||||||| Sbjct 10051 TGCGAAGGAAACCATGCATCTTGCCCTCTTTCACC--AGTTGTATTTGAGCTGAGTTCCA 10108 Query 51267 CAATTCGTCGTGAGTTT 51283 || || ||||| |||| Sbjct 10109 TAAGTCATCGTGTGTTT 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432514914038585