Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7375 161 1e-34 seq76880 143 3e-29 seq28252 136 4e-27 seq89276 134 2e-26 seq39882 129 7e-25 seq6788 127 2e-24 seq26269 118 1e-21 >seq7375 Length=9560 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||||||||| || || || || | ||| |||||||| || | |||||||||||||||| Sbjct 4839 TCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCA 4780 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || || |||||||| || || || |||||||| || | |||||||| |||| Sbjct 4779 AAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGCAATTATACGTTCTCCAAAT 4720 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || | || |||| |||||| | ||| ||||| || || || ||||||| ||| ||| Sbjct 4719 GTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACATGGT 4660 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || ||||| || || || |||| | |||| Sbjct 4659 AGAGTTTCAATTGCATTGAATAAGAAATC 4631 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||| | ||| ||||| || ||||| | ||| ||||| || ||||| ||||| ||||| || Sbjct 4037 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 3978 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||| || || ||||| || || ||||| || | || || ||||| || || | ||| Sbjct 3977 AATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTC 3918 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || | || ||||| || |||||||| || |||||||| || || || | |||||| || Sbjct 3917 CACCAAGTTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGAT 3858 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||||||||||||| |||||| | | |||||||| Sbjct 3857 AAAATGTTTCTCACAATCTTTTAATGTCTCCCAATC 3822 Score = 125 bits (138), Expect = 8e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || |||||||| ||||||||||||||||||| |||||||| ||||| | |||||| ||| Sbjct 3658 TCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGCCATATATCT 3599 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 ||||||| ||||| ||||| || ||||| ||||||| || | | | || || ||| Sbjct 3598 GGATATTGGATTGGGAATATAACGAAACGTCTAGGGTTTTCCCTCAACAGGGGTTCAAGT 3539 Query 93710 TGTGGGTCAAAC 93721 |||||||||||| Sbjct 3538 TGTGGGTCAAAC 3527 >seq76880 Length=2446 Score = 143 bits (158), Expect = 3e-29 Identities = 89/94 (95%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCG 126323 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 2139 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCTCTGGGAGCG 2198 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||||||| | || || Sbjct 2199 TGGGTTCGAACCCCACACCTGACAAACTTTTTTT 2232 >seq28252 Length=18149 Score = 136 bits (150), Expect = 4e-27 Identities = 83/87 (95%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 93 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 34 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 33 GTGGGTTCGAACCCCACACCTGACAAA 7 >seq89276 Length=1825 Score = 134 bits (148), Expect = 2e-26 Identities = 97/109 (89%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 920 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGCG 861 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTAT--TATTGGAATTTTTGTT 126369 |||||||||||||||||||||||| ||||| | | | ||||||||| Sbjct 860 TGGGTTCGAACCCCACACCTGACATCATTATAGTGTCGTCATTTTTGTT 812 >seq39882 Length=8031 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 5503 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 5562 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||| ||| Sbjct 5563 TGGGTTCGAACCCCACACCTGACATATT 5590 >seq6788 Length=8499 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 4318 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGGAGGGAGCG 4377 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 4378 TGGGTTCGAACCCCACACCTGACA 4401 >seq26269 Length=1414 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| Sbjct 731 GTCAGGTTGGCCGAGTGATCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 672 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||| | |||||| Sbjct 671 TGGGTTCGAACCCCACACATCACAAAT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555789128351160