Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq27008 129 5e-25 seq9095 125 6e-24 seq58137 122 7e-23 seq133270 93.3 4e-14 seq52194 84.2 2e-11 >seq27008 Length=12848 Score = 129 bits (142), Expect = 5e-25 Identities = 202/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 105402 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105461 ||||||||||| | ||| | |||| ||||||| | || || | | || Sbjct 4533 ATGCCCGGCCCCGTGCACTCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCAGCTTCAGC 4474 Query 105462 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105521 || ||||| | ||| | || || | ||| ||| || | |||||||| || || | |||| Sbjct 4473 GACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTAC 4414 Query 105522 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105581 |||||| | ||||| ||| || || || || || |||||||| || ||||| |||| Sbjct 4413 ACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGACTGGGAG 4354 Query 105582 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105641 |||| ||||| ||||||||| | || || || ||||| || || || | | ||| | Sbjct 4353 AACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAG 4294 Query 105642 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCG 105690 ||||||||||| | || ||||| ||| |||||| | || || |||| Sbjct 4293 CTGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAGGCGTGCG 4245 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || ||||| ||| |||| |||| || ||||| ||||||||||| || ||||| ||| Sbjct 4776 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 4717 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| ||| | | ||||||||| || ||| || || | || |||||||| ||| Sbjct 4716 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAG 4657 Query 105282 TGCCCGTTTTTGCG 105295 ||||| || |||| Sbjct 4656 TGCCCCTTCCTGCG 4643 >seq9095 Length=14658 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| |||||||| |||||| | ||| |||| | Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||| ||| |||||||||||| |||| |||||| Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| ||| || || ||| |||||||| || || | || |||||| Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 4889 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| | ||||||||||||||||| | ||||| Sbjct 4888 ATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGG 4842 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| |||||||| |||||| | ||| |||| | Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||| ||| |||||||||||| |||| |||||| Sbjct 5692 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 5633 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || ||| |||||||| || || | || |||||| Sbjct 5632 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 5573 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| | |||||||| |||||||| | ||||| Sbjct 5572 ATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGG 5526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| |||||| | || || ||||| ||||| | ||| || || Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 5237 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||||| || || || || ||||| || ||| Sbjct 5236 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 5177 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || |||||||||| || || |||||| | |||||| | | ||||| | || || | Sbjct 5176 CAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTAT--CAGACTACA 5119 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || || |||||||| |||||||||| | |||||| | ||||| Sbjct 5118 ACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | || || |||||||| || ||||| |||| | Sbjct 6664 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 6605 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| ||| ||| ||||| |||||| |||| |||||| Sbjct 6604 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6545 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || ||| | |||||| || || | || |||||| Sbjct 6544 CAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCAGACTATAAT 6485 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| | || || ||||||||||| || ||||| Sbjct 6484 ATCCAGAAGGAGTCTACTTTGCACTTGGTGTTGCGTCTACGGGGTGG 6438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| || ||||| || || ||||| |||| | Sbjct 5525 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 5466 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || |||||| ||||| ||||| |||| || || Sbjct 5465 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| ||||| |||| || |||||||| | |||||| ||| || | || ||||| Sbjct 5405 ACAGAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAA 5346 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| |||||||| | || ||||| |||| || | ||||| Sbjct 5345 TATTCAAAAGGAATCTACTTTGCACTTAGTTCTGCGGCTAAGAGGTGG 5298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| |||||||| || || ||||| || ||| Sbjct 5981 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACACTGGAAGTTGAGCCCTC 5922 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | | | | || || |||||| || || ||||| |||| || || Sbjct 5921 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 5862 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||||||||| ||| || || || | |||||| || || | || || || Sbjct 5861 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGTCTGACTACAA 5802 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| |||||||||| | |||||| | ||||| Sbjct 5801 TATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| |||| |||||||| || || ||||| |||| | Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | || || ||||| || ||||| ||| ||||| ||||| Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| ||||||| ||| || || || | |||||| ||| | | || || || Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| | ||| | || | || ||| | ||||| Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTACGGCTGAGAGGTGG 5982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || || || |||| || ||||| || || ||||| |||| | Sbjct 4841 AATGCAAATTTTCGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 4782 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || |||||| ||||| ||||| |||| ||||| Sbjct 4781 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 4722 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| || |||| ||| || || ||| |||||||| || || | || ||||| Sbjct 4721 ACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAGACTATAA 4662 Query 111366 TATACAAAAAGAATCTACACTACA 111389 ||| || ||||||||||| || || Sbjct 4661 TATCCAGAAAGAATCTACTCTTCA 4638 >seq58137 Length=8097 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || ||||| ||||| | || || ||||||||||| ||||| ||||| Sbjct 7530 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 7589 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| || ||| | |||||| |||||| ||||| |||||| |||| ||| Sbjct 7590 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 7649 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | |||| || || || ||||||||||| || | | || || Sbjct 7650 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTAC 7709 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| |||||||||||||| || || || || |||||||| || ||||| Sbjct 7710 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 7759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCG 111358 |||||||| ||||| |||| ||| || |||||| |||||||| | | | ||| | | Sbjct 7883 GATCAACAGAGGCTGATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTAT--CTG 7940 Query 111359 ATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||||| ||||| |||||||| ||||||||||| ||||| || || || || Sbjct 7941 ATTATAATATTCAAAAGGAATCTACCCTACATTTAGTATTGCGACTTCGTGGCGG 7995 >seq133270 Length=334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || || ||||||||| ||||| ||||||| Sbjct 183 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 124 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | |||||| |||||| |||||||| ||| | || ||||| Sbjct 123 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGCATCCCTCCTGATCAG 64 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111342 || | ||||| | ||| || || |||||||||||| Sbjct 63 CAGCGTCTTATCTTTGCCGGTAAGCAATTGGAAGAT 28 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||||||| |||| ||||||||| | ||||||| ||||||||| ||||| ||| Sbjct 318 GACAAAGAAGGCATTCCTCCGGATCAACAACGTCTTATTTTTGCGGGCAAGCAATTAGAA 259 Query 111340 GAT--TCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGT 111397 ||| || | ||||| | || || || || |||||||||||||| | || ||||| Sbjct 258 GATGGTCGTACACTAT--CTGACTACAACATCCAAAAAGAATCTACTTTGCACTTAGTAC 201 Query 111398 TGCGTCTGCGCGGTGG 111413 | ||| | | ||||| Sbjct 200 TTCGTTTAAGAGGTGG 185 >seq52194 Length=4646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| || ||| ||||| || ||||| | || || | ||| || ||||| ||||| Sbjct 3567 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTCATCTTTGCTGGTAAACAGTTGGAG 3508 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||| || | |||||||| || |||||||||||||| | |||||||| | Sbjct 3507 GATGGCCGCACTCTGTCGGATTATAACATCCAAAAAGAATCTACCTTGCATTTAGTACTT 3448 Query 111400 CGTCTGCGCGGTGG 111413 ||||| |||||||| Sbjct 3447 CGTCTTCGCGGTGG 3434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422246218187800