Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq9095 134 1e-26 seq89413 114 9e-21 seq52194 98.7 7e-16 seq58137 86.0 4e-12 seq101113 82.4 5e-11 >seq9095 Length=14658 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| | || |||||||| || || ||||| |||||| | Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||| ||||||||||| | || | | || Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| |||||||| |||||||| || || || |||||| | ||| | | || ||||| Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||||| | ||| ||||| |||| | |||| ||| Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTACGGCTGAGAGGTGGA 5981 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || |||||||| || || ||||| || || | Sbjct 5981 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACACTGGAAGTTGAGCCCTC 5922 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||| || || | ||| | |||| Sbjct 5921 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 5862 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || ||||| |||||||| || || || |||||| | || || | || ||||| Sbjct 5861 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGTCTGACTACAA 5802 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||| | ||| | ||| | ||| | |||| || Sbjct 5801 TATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5754 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || || ||||| || || ||||| |||||| | Sbjct 5525 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 5466 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| || || || ||| | ||| | |||| Sbjct 5465 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || || ||||||||||| ||||||||| | ||| || | || || || Sbjct 5405 ACAGAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAA 5346 Query 22013 TATTCAGAAGGAATCTACT 22031 |||||| |||||||||||| Sbjct 5345 TATTCAAAAGGAATCTACT 5327 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || ||||| ||||| | ||| || | | Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 5237 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| ||||||| ||||| ||||| | || | ||||| Sbjct 5236 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 5177 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAA--AAACTATGGCCGATTACA 22011 ||||| ||||| || ||||| |||||||| |||||| | | ||||| | || |||| Sbjct 5176 CAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTAT--CAGACTACA 5119 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | |||||||||||||||||| | ||| | ||| | ||| | |||| || Sbjct 5118 ACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || ||| | || || ||||| || || ||||| |||||| | Sbjct 4841 AATGCAAATTTTCGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 4782 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| || || || ||| | ||| | | || Sbjct 4781 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 4722 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||||| || |||||||| || ||||| |||||| || || | || || || Sbjct 4721 ACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAGACTATAA 4662 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||| ||||| |||||||||||||| Sbjct 4661 TATCCAGAAAGAATCTACTCTTCA 4638 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| ||||||||||| | || | | || || |||||||| |||||||| || Sbjct 6352 AAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTATTTTTGCTGGAAAG 6293 Query 21978 CAACTAGAAGATTTA--AAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 22035 || ||||||||| | | ||||| | |||||||| |||||||| ||||||||| | | Sbjct 6292 CAGCTAGAAGATGGACGCACACTAT--CTGATTACAACATTCAGAAAGAATCTACTTTGC 6235 Query 22036 ATATGGTATTACGTTTACGAGGAGGA 22061 | | ||| |||| | |||| ||| Sbjct 6234 ACCTAGTACTACGGCTGAGAGGTGGA 6209 >seq89413 Length=986 Score = 114 bits (126), Expect = 9e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 84465 GGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGG 84524 || |||||||| | |||| || ||||| || ||||||| || ||||| ||||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 84525 ATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCG 84584 || | | ||| || ||| |||| || || || || || || || | || |||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 84585 GGTATCACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTAC 84644 ||| |||| | | ||| || || || | |||||||||||| || || || ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 84645 AACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACT 84704 | |||||| | | ||| || | || | |||||||| || || | || || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 84705 CCCCATTCAACAAAATACGCA 84725 |||||||| || || || ||| Sbjct 746 CCCCATTCTACGAAGTAGGCA 726 >seq52194 Length=4646 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG-C 21892 |||||||||||| | || ||| |||| ||||| || || || ||||| || |||| | Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGA-GCCGTC 4519 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || ||| |||||||||||| | || | | || Sbjct 4518 TGACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCA 4459 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | ||||||||||| |||||||| || |||||| | || | | || ||||| Sbjct 4458 ACAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAA 4399 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| ||||| |||||| | ||| | ||| | ||||| || Sbjct 4398 CATCCAAAAGGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG 4351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| | || || ||||| || || ||||| || | | Sbjct 4117 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTAGAGCCATC 4058 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| || ||| ||||| || || | ||| | | || Sbjct 4057 CGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 3998 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | |||||||| ||||| || ||||| |||||| || || | || ||||| Sbjct 3997 ACAACGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 3938 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| || || || ||||| ||||| | ||| | |||||||| Sbjct 3937 TATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 3890 >seq58137 Length=8097 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | |||||| | ||||| ||||||||||| ||||| ||| | Sbjct 7529 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 7588 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || |||||| || || || || | ||| | | Sbjct 7589 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 7648 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | | || || ||||| || ||| | ||||| | || | | || || Sbjct 7649 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTA 7708 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| || |||||||||||||| ||||||| ||| | || || ||| Sbjct 7709 CAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGA 7760 >seq101113 Length=271 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||| || |||||||| || || || ||||||||||| || ||||| ||||| |||||| Sbjct 96 GGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 37 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAA 84331 ||| | | | ||||||||| || || | ||||| Sbjct 36 CATGTTAGAAGAAACTCCTTTACTGACTGCACAAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357452823466486