Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9095 127 2e-24 seq58137 122 7e-23 seq52194 120 3e-22 seq89413 118 9e-22 seq133270 107 2e-18 seq21475 102 7e-17 >seq9095 Length=14658 Score = 127 bits (140), Expect = 2e-24 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCTT 114231 |||||||||| |||||||| || ||||||||||| | || ||| || || ||||| Sbjct 5088 ACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGT--CTGATAGTGTGCGTCCATCTT 5145 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 |||||||||| |||||| | || || | ||||||||| || ||||| || || || || Sbjct 5146 CAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTT 5205 Query 114292 CAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||| ||||| |||| | | ||||| ||||| | | || || || | || | ||| Sbjct 5206 GAAT-TTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTT 5264 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || |||||||||||||| ||||| Sbjct 5265 TTACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | ||| |||||||| | ||||| || || || || || || || Sbjct 5523 ATTCCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCT 5582 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || |||||| | || || | ||||| || ||| Sbjct 5583 GACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGA 5642 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||||| ||| | | ||| | ||||| | | ||| Sbjct 5643 GGAATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCC 5702 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| ||||| ||||| |||||||| ||||| Sbjct 5703 ACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | ||| |||||||| | ||||| || || || || || || || Sbjct 4839 ATTCCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCT 4898 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || ||||| | || || | ||||| || ||| Sbjct 4899 GACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGA 4958 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||||| ||| | | ||| | ||||| | | ||| Sbjct 4959 GGAATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCC 5018 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| ||||| ||||| |||||||| ||||| Sbjct 5019 ACTTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | || |||||| || | |||||||| |||||||| || || || Sbjct 5295 ATCCCACCTCTTAGCCGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCA 5354 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| || ||||| |||||| | || || | ||||||||| ||| Sbjct 5355 GACAGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGA 5414 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| ||| ||| | ||| | | ||| | || || | | ||| Sbjct 5415 GGAATACCTTCCTTGTCTTGAAT-TTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTC 5473 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || ||||| || ||||||||||| ||||| Sbjct 5474 CACTTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 5524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | ||| || || || | ||||| || || || || || || || Sbjct 6435 ATTCCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCT 6494 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || ||| | || || | ||||| || ||| Sbjct 6495 GACAATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGA 6554 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||| |||| | ||| | || || | | ||| Sbjct 6555 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCC 6614 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || || | ||||||||| || || |||||| Sbjct 6615 ACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 6665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||| ||||| || | ||| || ||||||||| || || ||| Sbjct 6012 GTAGATTCCTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCA 6071 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | ||||| || || |||||||| ||||| || || ||| | || Sbjct 6072 GCAAAAATAAGTCTTTGTTGATCTGGGGGAATGCCCTCTTTATCCTGGAT-TTTCGCCTT 6130 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||||| || || | | ||| || |||| || | |||||||| ||||| || Sbjct 6131 AACATTTTCAATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGT 6190 Query 114365 TTTTACAAAAATCTGCAT 114382 ||||||||| || ||||| Sbjct 6191 TTTTACAAATATTTGCAT 6208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | ||| | || | ||||||||||| || || || || || || ||||| Sbjct 4623 AGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGTACGC 4682 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| ||||| || ||||| | || || | ||||| || |||||||| ||||| Sbjct 4683 CCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTCC 4742 Query 114285 TTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 ||||| ||| ||| | ||| | | ||| | || || | | ||| || |||| || Sbjct 4743 TTGTCTTGAAT-TTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGT 4801 Query 114344 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || ||||| || ||||| ||||| ||||| Sbjct 4802 GATAGTTTTCCCAGTCAGTGTCTTTACGAAAATTTGCAT 4840 >seq58137 Length=8097 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | ||||||||||||||||| ||||| || Sbjct 7762 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 7703 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| | ||| || |||||| | || | ||| ||||| || ||| Sbjct 7702 GAAAGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 7643 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || ||||| | ||||| || |||| | ||| Sbjct 7642 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 7583 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 7582 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||||||||| |||| ||| |||||||||| |||||||| |||||||| || ||||| Sbjct 7998 ATACCGCCACGAAGTCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCA 7939 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTC 114268 | | || ||||| |||||| |||||||| ||||| | || || | |||||| || Sbjct 7938 GATAAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATC 7883 >seq52194 Length=4646 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | |||||||||||||| ||||| ||||| || ||| || ||| || Sbjct 3452 ACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGACAGAGTGCGGCCATCCTCC 3511 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||||||||||| ||||||||||||||||||| || |||||||| || ||||| Sbjct 3512 AACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 3571 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | ||| | ||||||| | || || |||| || | || || Sbjct 3572 ATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCAACCTCCAAAGTGATGGTCTTC 3631 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || || || |||||||| Sbjct 3632 CCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 >seq89413 Length=986 Score = 118 bits (130), Expect = 9e-22 Identities = 186/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 20445 TGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGT 20504 ||| || || ||||||||||| || |||||||| |||| ||||| || |||| | Sbjct 726 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTAGATCGTATACCTAT 785 Query 20505 TCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAA 20564 || ||| | |||| |||| || |||||| | |||||||||||||| || || ||||| Sbjct 786 ACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 845 Query 20565 CGA-CGCGTTAAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGG 20623 || | | |||| || || | |||| ||| | || || || || | Sbjct 846 TGATAGTTTAAAAGAGATCGAAGGC----AGTTTCCAAGCACTACAGCGGTCCTGTAGCG 901 Query 20624 GCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAA 20683 |||| || | || ||||| | || |||||||| ||||| || |||| |||||||||| Sbjct 902 GCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAA 961 Query 20684 AAGGAGTATCCTCTTGGAACGAACC 20708 ||||| | || || |||||||| || Sbjct 962 AAGGATTGTCTTCATGGAACGAGCC 986 >seq133270 Length=334 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 114201 ATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGC 114260 |||||||| || || || ||| |||||| | ||| ||||| || |||| |||||| Sbjct 2 ATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCGGCAAAGATAAGACGC 61 Query 114261 TGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTG 114320 || || || ||||| ||||| |||||||| ||| || ||||| | ||||| || Sbjct 62 TGCTGATCAGGAGGGATGCCCTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTA 121 Query 114321 TCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | || ||| || |||| ||| | || || || || || ||||| |||||||||||| Sbjct 122 TCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGC 181 Query 114381 AT 114382 || Sbjct 182 AT 183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | |||||||||||||| |||||||| || | |||||| |||||| Sbjct 203 ACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGTGTACGACCATCTTCT 262 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 | ||| || || || | || ||||| ||||| ||||||||||||||||||||||| Sbjct 263 AATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTC 318 >seq21475 Length=13715 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || || |||| | || | ||| | || ||||| |||||||||||||| || Sbjct 11124 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 11065 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || ||||| |||||| |||||||||||||| |||| | ||| || ||||| || | Sbjct 11064 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 11005 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| || || || || ||||| | ||| | || || | || || | Sbjct 11004 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCA 10945 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| || || || || || || ||||| ||||| Sbjct 10944 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 10896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419346070183908