Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq103 152 4e-32 seq9095 93.3 3e-14 seq35452 87.8 1e-12 >seq103 Length=7362 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1247 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 1188 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 1187 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 1150 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1247 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 1188 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 1187 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 1150 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1309 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 1258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1309 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 1258 >seq9095 Length=14658 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || |||| ||| | ||| | || ||||||||| || || || |||| | Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 4901 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || |||| |||||| || ||||| ||||| | || ||||| || Sbjct 4902 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGA 4961 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||||||||| ||| ||| |||| | || | | |||| || ||| Sbjct 4962 ATGCCTTCTTTGTCCTGAATCTTT-GCTTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 5020 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| || || |||||||||||||| |||||||| Sbjct 5021 TTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || |||| || | ||| | || ||||||||| || || || |||| | Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 5585 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || |||| |||||| || || || ||||| | || ||||| || Sbjct 5586 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 5645 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||||||||| ||| ||| |||| | || | | |||| || ||| Sbjct 5646 ATGCCTTCTTTGTCCTGAATCTTT-GCTTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 5704 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| || || |||||||||||||| |||||||| Sbjct 5705 TTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 >seq35452 Length=10678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| ||| |||||| | |||||||| || || ||| ||||| ||||||||| Sbjct 10123 ACACACGATGACTTATGGAACTCAGCTCAAATACAACTGGTGAAAGAGGGCAAGATGCAT 10064 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC- 37945 | | |||||||| ||||||||||| ||||| |||||| | | | || | || Sbjct 10063 GGTTTCCTTCGCATGTACTGGTGCAAGAAGATTTTAGAATGGACCCA-GTCGCCCGAACA 10005 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | || | || ||||| | |||||| | ||||| | ||||| | ||||| || Sbjct 10004 GGCTTTGAAGTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCTAA 9945 Query 38006 CGGTTACGTCGG 38017 ||||| || || Sbjct 9944 TGGTTATGTTGG 9933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396317361915118