Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18220 149 7e-31 seq52194 123 3e-23 seq9095 109 6e-19 seq31600 102 9e-17 seq21475 98.7 1e-15 seq7010 98.7 1e-15 seq30828 95.1 1e-14 seq30827 91.5 2e-13 seq38911 89.7 6e-13 seq58137 87.8 2e-12 seq101375 86.0 7e-12 seq147150 84.2 2e-11 seq36792 84.2 2e-11 seq100443 82.4 8e-11 >seq18220 Length=5896 Score = 149 bits (164), Expect = 7e-31 Identities = 367/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 95638 TATTTGGATCATGTGTTTTTAATGAGTTACGACTTTAAAGGCGCATGGTCCAACACGGAT 95697 ||| |||||||| | || || |||||||||||||| || || || ||||| || | Sbjct 5878 TATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATGATACT 5819 Query 95698 TTGGGTCATCAAACACCATTGTACGCACCTTCGTGGAACCCTGACGACAAGTACACAACT 95757 | || |||||||| ||||||||||| ||| ||||||| || | || | |||||| || Sbjct 5818 CTAGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTACACATCT 5759 Query 95758 GACTATGCCGTAAAAGAACTGCTTAAGCAAAAAGTACCTTCCAACAAAATTGTTGTGGGA 95817 |||| | |||||| | |||| ||| ||| | | || || ||||| || || Sbjct 5758 GACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGTAGTAGGT 5699 Query 95818 GTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCACGATTACAAAAACAATAACGTATTT 95877 || || ||||| || | || |||| |||||| || ||||||||| |||| | || Sbjct 5698 GTTGCTATGTATGGTCGTGGCTGGACTGGTGTTCATGATTACAAAGACAACATTCCCTTC 5639 Query 95878 ACGGGCGTCGCCACAGGTCCGGTAAAAGGCACATGGGAAAACGGTGTCGTCGATTATAGG 95937 || ||| ||| || || || || ||||| || ||| || |||| || || || || ||| Sbjct 5638 ACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTTGACTACAGG 5579 Query 95938 CAAGTT---AACGATTTTAAAAACAGTCCAGCTTACACTTACGCTTACGACAAAGTGGCC 95994 | || || || || | || | || | | || | ||||||||| || ||| Sbjct 5578 GAGATTGCGAATGAAATTGCTCA-AGGCAAG-TGGGAGTT-CCATTACGACAATGTCGCC 5522 Query 95995 GAGGCGCCGTACGTTTACGGCGGATCCGACCAGGCGTTGGATCTGATTTCTTACGACGAC 96054 | || || ||||| | | | ||| | | || ||||| | | || || | Sbjct 5521 CAAGCCCCTTACGTCTTCAGACCATC--AACTGG----AGATCTTGTAACCTATGATAAT 5468 Query 96055 ACGTCGTCGGTATTAGCCAAAGGCGATTACGTGTTACAGAATAATTTAGGTGGTTTGTTT 96114 | || || | | ||||| | || || | | || || |||||||| | ||| Sbjct 5467 GCTAGATCCGTTATTGAAAAAGGTAAATATGTAAGAAATAACAAGCTAGGTGGTCTCTTT 5408 Query 96115 GCATGGGAAATAGATGCCGATAATGGTGATTTGTTAAACGCCATGAACACAGGTCTGGGC 96174 || |||||| | || |||||||| |||||| | | || |||||||||| ||||| || Sbjct 5407 GCTTGGGAAGTGGACGCCGATAACGGTGATCTACTGAATGCCATGAACATGGGTCTCGGT 5348 Query 96175 AACAGCCCTGC 96185 || || || || Sbjct 5347 AATAGTCCGGC 5337 >seq52194 Length=4646 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| |||||| || ||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 3661 ACCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGA 3720 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| |||||||| ||||| || || || || | || Sbjct 3721 GAGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGG 3780 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 3781 AATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAAC 3840 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 3841 TTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 >seq9095 Length=14658 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||| |||| || || ||||| || |||||||||||||| || |||| | Sbjct 5298 CCACCTCTTAGCCGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGAC 5357 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || |||||||| || |||||||| || || | ||| ||||| | || Sbjct 5358 AGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 5417 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| |||| | || | | | | || || | |||||| Sbjct 5418 ATACCTTCCTTGT-CTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 5476 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| ||||| || || || ||||||||||| ||||||||| Sbjct 5477 TTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 5525 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || |||||||||||| ||||| || |||||| || ||||| || || | | Sbjct 6438 CCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 6497 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || ||| | || || || ||||| || ||||| || |||| || || || | || Sbjct 6498 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 6557 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||| | ||| | |||| || | | | | || || | |||||| Sbjct 6558 ATGCCTTCCTTGT-CTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCAC 6616 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || |||| || ||||| ||||||||||| Sbjct 6617 TTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 6664 >seq31600 Length=2932 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1533 AAAAAGTTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1474 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||||||| ||||| Sbjct 1473 TTACCACTATACTACCGAAGATTG 1450 >seq21475 Length=13715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | || | ||| | |||||||||| ||||||||||| ||||| |||| Sbjct 11123 ACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGA 11064 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || ||||| || |||||||| || || | || |||||||| | ||| Sbjct 11063 CAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 11004 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || |||||| ||| | | | | || || | ||||| Sbjct 11003 AATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCAC 10944 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || |||||||| ||||| || ||||| || || ||||||||| Sbjct 10943 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 10895 >seq7010 Length=9211 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4391 AAAAGTATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4332 Query 57058 TCACCACTATACTACCGAGGATTGAATATATAACTTGAA 57096 | |||||||||||||||| ||| || | ||| ||||| Sbjct 4331 TTACCACTATACTACCGAAGATGTAACAAATATGTTGAA 4293 >seq30828 Length=2787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 14751 TACAACATTGGTTTATTTTACTATGTACTGTGGAGTATATGCAGTGGCAAGGAGTGGATG 14810 ||||||| ||||| ||||| ||||||||||||| |||||| | | || || |||||| Sbjct 658 TACAACAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTGATCGTAAAGAATGGATG 717 Query 14811 GATAAAAATGTGGCTGCCCAATTC-CTGAA-ATACGTCAA-ACGTCGCATCGAAACCACA 14867 || |||||| || | ||||| ||| ||| || || ||| |||| ||| Sbjct 718 GACCGAAATGTTGCAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTGCCGAA---ACA 774 Query 14868 ACATGCAAGCTTGGACTCTCGTCTCTTCCCTTGGACCCACAAATGAATACGTCACT-CCT 14926 | |||| | |||| | | || ||||| ||||| || ||| | |||||||| ||| Sbjct 775 AAATGCTATATTGGTTTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTGCCT 834 Query 14927 GACCGCATTATGGTATTGTGTCGACCTCTCATCCGACATATTTAAAAATGACAAAGTTAA 14986 | | || | ||||||||||| || | ||||| ||||||||||| | || || | | Sbjct 835 G-CAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATAACGCGCA 893 Query 14987 TTACGCCTTTGAACGATT 15004 |||| || ||| |||| Sbjct 894 TTACTCCAAAGAAAGATT 911 >seq30827 Length=2392 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 14751 TACAACATTGGTTTATTTTACTATGTACTGTGGAGTATATGCAGTGGCAAGGAGTGGATG 14810 ||||||| ||||| ||||| ||||||||||||| |||||| | | || || |||||| Sbjct 296 TACAACAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTGATCGTAAAGAATGGATG 355 Query 14811 GATAAAAATGTGGCTGCCCAATTC-CTGAA-ATACGTCAA-ACGTCGCATCGAAACCACA 14867 || |||||| | || ||||| ||| ||| || || ||| | ||| ||| Sbjct 356 GACCGAAATGTTGTTGAAAAATTCAAAGAATATATGTTAAGGCGTATTACCGA---GACA 412 Query 14868 ACATGCAAGCTTGGACTCTCGTCTCTTCCCTTGGACCCACAAATGAATACGTCACT-CCT 14926 | |||| | |||| || | || ||||| ||||| || ||| | |||||||| ||| Sbjct 413 AAATGCTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTACCT 472 Query 14927 GACCGCATTATGGTATTGTGTCGACCTCTCATCCGACATATTTAAA 14972 | | || | ||||||||||| || | ||||| | ||||||||| Sbjct 473 G-CAGCTCTCTGGTATTGTGTAGAAATTTCATCATATATATTTAAA 517 >seq38911 Length=4699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| ||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4259 AAAAAATCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4316 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||||| || Sbjct 4317 TGACCACTATACTACCGAAGA 4337 >seq58137 Length=8097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || || |||||||||||||| |||| || || || | Sbjct 7748 ACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCC 7689 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||||| |||||||| || | || || || || | || | || ||||| Sbjct 7688 GTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 7629 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| |||| | ||| | | | | || ||| | ||| || || | || | Sbjct 7628 GT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAA 7570 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||| ||||| || || || |||||||| |||||||| Sbjct 7569 TGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq101375 Length=1150 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 14751 TACAACATTGGTTTATTTTACTATGTACTGTGGAGTATATGCAGTGGCAAGGAGTGGATG 14810 ||||| | ||||| ||||| ||||||||||||| |||||| | | || || |||||| Sbjct 317 TACAATAAGGGTTTGTTTTATTATGTACTGTGGAATATATGTGATCGTAAAGAATGGATG 376 Query 14811 GATAAAAATGTGGCTGCCCAATTC-CTGAA-ATACGTCAA-ACGTCGCATCGAAACCACA 14867 || |||||| | | ||||| ||| ||| || || ||| | |||| ||| Sbjct 377 GACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTACCGAA---ACA 433 Query 14868 ACATGCAAGCTTGGACTCTCGTCTCTTCCCTTGGACCCACAAATGAATACGTCACT-CCT 14926 | ||| | |||| || | || ||||| ||||| || ||| | |||||||| ||| Sbjct 434 AAATGTTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTACCT 493 Query 14927 GACCGCATTATGGTATTGTGTCGACCTCTCATCCGACATATTTAAA 14972 | | || | ||||||||||| || | ||||| ||||||||||| Sbjct 494 G-CAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAA 538 >seq147150 Length=242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAA 57083 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATGGTG 60 Query 57084 TATA 57087 |||| Sbjct 61 TATA 64 >seq36792 Length=1665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1665 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGAT 1610 >seq100443 Length=576 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| || |||| ||||| |||||||||||||||| ||| ||||| | |||| Sbjct 283 TCTCCCCGGCGAGGAATCAAACCCCGGTCTCCCGCGTGACATCCGGGGATACTTATCACT 342 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 343 ATACTACCGAGGA 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542167393756560