Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1542 86.0 5e-12 seq1630 82.4 6e-11 >seq1542 Length=6114 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||| | || ||| | || ||||||||| || || || |||| ||||| ||||| Sbjct 553 TGGGTACGTGACCACCGAGTCCACCACAAGCTATCGGAAACTTCGGCGGACCCTCACAAT 494 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || || | ||||||| |||||||| ||||| ||||||||||||| || |||| | Sbjct 493 GCTCACCGTGGGTTCTTTTTCTCGCATGTGGGGTGGCTCATGATGAAGAAACACCCTCAT 434 Query 108586 GTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATAT 108625 || ||| | || ||||| || ||||| ||||||| Sbjct 433 GTCATCAGCGAAGGCAATAAAATTGATATGACCGACATAT 394 >seq1630 Length=18945 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 108784 AACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGACAAG 108843 ||| | |||||||| || || || || || |||| | |||||| || | ||| || Sbjct 10630 AACGTGACGTGGCTCGTGAACTCTGCTGCTCACAAATGGGGCGACAAACCCTACGATAAA 10689 Query 108844 AACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCAC 108903 || ||| || ||||||| | || ||| ||| || |||||||| || | ||| Sbjct 10690 AATATTCAACCCTCTGAAAACATCTCCGTCTCGGTGTTTGCGCTCGGCGAAGGCTTCCAC 10749 Query 108904 AACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC---TTT 108960 ||||||||||| |||||| | ||||| ||| | || ||| |||| ||| || || Sbjct 10750 AACTACCACCATACGTTCCCGTGGGACTATAAGACAGCTGAGCTGGGCAACAACAGACTT 10809 Query 108961 AATTTCACC 108969 ||||||||| Sbjct 10810 AATTTCACC 10818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381056450943096