Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9095 114 1e-20 seq89413 111 2e-19 seq52194 111 2e-19 seq21475 111 2e-19 seq27008 93.3 4e-14 seq133270 89.7 5e-13 seq7375 82.4 8e-11 >seq9095 Length=14658 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | |||||||||| | || ||||| |||||||||||||| | Sbjct 5070 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTC--TG 5127 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||||| ||| || || |||||||| || | | || || | ||||||||| || | Sbjct 5128 ATAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGG 5187 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCC 138564 | || || || || || ||| |||||| ||||| | ||| | ||||| | | ||| Sbjct 5188 GAATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCA 5246 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||||||||||| || |||||||||||||| ||||| Sbjct 5247 ACTTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | |||||| |||||||| | | |||||||| || || || ||||| | Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 4901 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || ||||| || || | | | || || | ||||| || ||||| Sbjct 4902 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGA 4961 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | |||| ||||| | ||| | ||||| | | ||||| Sbjct 4962 ATGCCTTCTTTGTC-CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 5020 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| |||||||| ||||| |||||||| ||||| Sbjct 5021 TTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | |||||| |||||||| | | |||||||| || || || ||||| | Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 5585 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || ||||| || || | | || || | ||||| || ||||| Sbjct 5586 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 5645 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | |||| ||||| | ||| | ||||| | | ||||| Sbjct 5646 ATGCCTTCTTTGTC-CTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 5704 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| |||||||| ||||| |||||||| ||||| Sbjct 5705 TTCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| |||||| || | | || ||||||||||| || ||||| || ||| || Sbjct 5310 CGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGACAGAGTGCGTCCA 5369 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || ||||| || | | || || | ||||||||| ||||| |||||||| ||| Sbjct 5370 TCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTG 5429 Query 138520 TCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | |||| | ||| | || || | | ||||| || | || | Sbjct 5430 TC-TTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 5488 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| |||||||| || ||||||||||| ||||| Sbjct 5489 AGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 5524 >seq89413 Length=986 Score = 111 bits (122), Expect = 2e-19 Identities = 198/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 27983 AAACATCCCGAGAAAATTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAG 28042 ||||||| || ||| |||||| ||||| ||||| || ||||| || |||| || | Sbjct 704 AAACATCTGGA-AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAA 762 Query 28043 TTTCCCGTCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCG 28102 || ||||| || | || || || || | |||||||| ||||| || | || Sbjct 763 TTCCCCGTAGATCGTATACCTATACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCA 822 Query 28103 ATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGACCGTTCCC-GGCAGTTTCGAGGC 28161 || |||||||| |||||||| || || | || | | || ||||||||| | || Sbjct 823 ATTTGCGGCGGTGACGGCATCAATGATAGTTTAAA-AGAGATCGAAGGCAGTTTCCAAGC 881 Query 28162 GCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGC 28221 || ||||| || || ||| || | |||||||| || | ||||||||||| ||||| Sbjct 882 ACTACAGCGGTCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGC 941 Query 28222 CGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCC 28266 || | || || || ||||| || | ||| | ||||||||||| Sbjct 942 AGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGAACGAGCC 986 >seq52194 Length=4646 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||||||||| ||||||||||| Sbjct 4351 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 4410 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| |||| | |||| ||||| ||||| || || || Sbjct 4411 AAGGTACGTCCATCTTCCAGCTGTTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 4470 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| | || | |||| | ||| | |||||| | || ||| || Sbjct 4471 ATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGACGGCTCTAC 4529 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || ||||| || ||||| Sbjct 4530 TTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 4577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | | || || ||||| ||||| || || | Sbjct 3434 CCACCGCGAAGACGAAGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGAC 3493 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| |||||||||||||| || || Sbjct 3494 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 3553 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | ||| | ||||||| | ||| ||| Sbjct 3554 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCAACC 3613 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || || |||||||| Sbjct 3614 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 >seq21475 Length=13715 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| || || ||||||||||| | | Sbjct 11089 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 11030 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| || || |||||||| || || |||||| ||||| Sbjct 11029 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACA 10970 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||||||||||| || | |||||||| || || || || Sbjct 10969 TTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTG 10910 Query 138601 ACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 10909 ACGAAAATTTGCAT 10896 >seq27008 Length=12848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 124741 GGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAATT 124800 |||||||| || ||||| |||||| ||||| || ||||| || || ||||| |||||| Sbjct 4773 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 4714 Query 124801 ATGCGATGGCAGCCCGGCGACGAT-CCGCTAACGGACCACAAACGATGGGCGCCTCAGTG 124859 ||| |||| | ||||||||| |||| || ||||||| | || |||||||| ||||| Sbjct 4713 ATGAAATGGGTTGCGGGCGACGATCCCGCCAA-GGACCACCAGCGCTGGGCGCCCCAGTG 4655 >seq133270 Length=334 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138433 ATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGC 138492 ||||||||||| || || || || || | ||| ||||||| | |||| |||||| Sbjct 2 ATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCGGCAAAGATAAGACGC 61 Query 138493 TGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGT 138551 || || || ||||| || || |||||||| ||| |||| | ||||| | ||| | || Sbjct 62 TGCTGATCAGGAGGGATGCCCTCTTTGTC-TTGAATTTTAGCTTTTACATTTTCAATAGT 120 Query 138552 GTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTG 138611 || | | ||||| || | || | || || ||||| || ||||| ||||||||||| Sbjct 121 ATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTG 180 Query 138612 CAT 138614 ||| Sbjct 181 CAT 183 >seq7375 Length=9560 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 52606 TGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGC 52665 |||| |||| || || || |||||| ||||||| || || | ||||||||| || | Sbjct 6299 TGTTACAGGATGCAGTAGCCATCGAACAGGAGTTCTTAACAGACGCGCTGCCAGTGCGCC 6358 Query 52666 TGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723 |||| ||||||||| ||| || |||| | | ||||| ||||||||||| ||||| || Sbjct 6359 TGCTAGGCATGAACTGCGACCTC-ATGTCCAATTACATAGAGTTTGTGGCTGATCGCCT 6416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495307349214480