Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9095 111 1e-19 seq58137 109 5e-19 seq52194 96.9 3e-15 >seq9095 Length=14658 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||||||||| || | |||||||| || || ||||| || || Sbjct 6437 TCCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGA 6496 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || || ||||| ||| | |||| || || ||||| ||||| Sbjct 6497 CAATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 6556 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| | | || ||| | | ||||| || || | | || | Sbjct 6557 AATGCCTTCCTTGT-CTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 6615 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | || | ||||| || || | ||||||||| || || |||||| Sbjct 6616 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 6665 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || |||| || || || | ||||| || ||||||||||| || || | Sbjct 5298 CCACCTCTTAGCCGCAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGAC 5357 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| ||||||||||| |||||| | |||| | ||| || || ||||| Sbjct 5358 AGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 5417 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||||| ||| | | ||| | || || | | || ||| Sbjct 5418 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 5477 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || ||||| || ||||||||||| ||||| Sbjct 5478 TCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 5524 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | ||||| || || ||||||||||| || | ||||| ||| || Sbjct 6000 ACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCA 6059 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| |||||||| | || | || || ||||| || || |||||||| || ||| | Sbjct 6060 AGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGAATGCCCTCTTTATCCTGG 6119 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 |||||| ||| | | ||| | || || | | || ||||| | || | |||||| Sbjct 6120 ATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTG 6179 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||||||||| || ||||| Sbjct 6180 CCAGTCAGTGTTTTTACAAATATTTGCAT 6208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||||| ||||| || || ||||| ||||| || | ||||| ||| || Sbjct 5088 ACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATCTTCA 5147 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| | || | | ||| || || || || || |||||||| | | || Sbjct 5148 AGTTGTTTTCCAGCGAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTAT-CTTG 5206 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| ||| || | | ||| | ||||| | | ||| ||||| | || | ||||| Sbjct 5207 AATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTT 5266 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||||||||||||| ||||| Sbjct 5267 ACCAGTAAGCGTTTTTACAAAAATTTGCAT 5296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||||| ||||| || || ||||||||||| || || ||||| ||| || Sbjct 5772 ACTAAATGTAAAGTAGATTCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCA 5831 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| |||||||| | || | | || || || ||||| || || ||||| || Sbjct 5832 AGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGA 5891 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | | ||||| ||||| | ||| ||||| | || | |||||| Sbjct 5892 ATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTTTG 5951 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || |||||||| || ||||| Sbjct 5952 CCAGTCAGTGTCTTTACAAATATTTGCAT 5980 >seq58137 Length=8097 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| ||||| || | ||||| ||||||||||||||||| || Sbjct 7760 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGA 7701 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || | || ||||||||| | ||||| || || ||||| ||||| Sbjct 7700 AAGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 7641 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| ||| || || | | ||| | || || | | || | Sbjct 7640 AATGCCTTCCTTGT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 7582 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || || ||||| ||||| |||||||| Sbjct 7581 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7533 >seq52194 Length=4646 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | || ||||| | ||||| |||||||| || || ||||| Sbjct 3433 TCCACCGCGAAGACGAAGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGA 3492 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || | |||||| ||||| |||| | ||||| || || || || Sbjct 3493 CAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGG 3552 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||| | | ||||| ||||| | ||| || Sbjct 3553 AATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCAAC 3612 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || ||||| || || || |||||||| Sbjct 3613 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| || || ||||| || | || |||||||| ||||||||||| || Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || |||||| | || | || || ||||| || || Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| ||| || || | | ||| | ||||| | || ||| Sbjct 3782 ATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 3841 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || || |||||||| |||||||| Sbjct 3842 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474585704654160