Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9095 114 1e-20 seq18220 109 6e-19 seq52194 95.1 1e-14 >seq9095 Length=14658 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||||||||| ||| ||||| || ||||||||||| ||| Sbjct 5982 CCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 6041 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||| || || || || | | || || || | || Sbjct 6042 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGTTGATCTGGGGGA 6101 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || ||| ||| ||| ||| | | | | || || | |||||| Sbjct 6102 ATGCCCTCTTTATCCTGGATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 6161 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct 6162 TCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATATTTGCATT 6209 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||||||||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 6438 CCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 6497 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | || ||||| ||||| |||||||| |||| | || || || | || Sbjct 6498 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 6557 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||||| ||| | | | | || || | |||||| Sbjct 6558 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 6617 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || | ||||| || ||||||||||| Sbjct 6618 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 6664 >seq18220 Length=5896 Score = 109 bits (120), Expect = 6e-19 Identities = 208/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 99406 TATTTGGACCATGTGTTTTTAATGAGTTACGATTTTAAAGGCGCCTGGTCCAACACCGAC 99465 ||| |||| ||| | || || ||||||||||| || || || |||||||| || || Sbjct 5878 TATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATGAT-AC 5820 Query 99466 T-TGGGTCATCAAACACCATTGTATGCACCATCGTGGAACTCCGAAGAGAGATACACAAC 99524 | | || |||||||| |||||||| || || ||||||| || | || | |||||| | Sbjct 5819 TCTAGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTACACATC 5760 Query 99525 CGATTATGCGGTTAAACAGCTATTAAAGAAAAAAGTGCCTTCTCACAAGATTGTAGTGGG 99584 || | | || ||| | | | | | |||| | || | ||||||||||| || Sbjct 5759 TGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGTAGTAGG 5700 Query 99585 AGTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCATGACTACAAAAATAATAACGTTTT 99644 || || ||||| || | || |||| ||| || ||||| |||||| | || | || Sbjct 5699 TGTTGCTATGTATGGTCGTGGCTGGACTGGTGTTCATGATTACAAAGACAACATTCCCTT 5640 Query 99645 TACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTGGGAAAACGGTGTTGTTGATTATAG 99704 || || || || ||||| || ||||| || ||| || |||| || ||||| || || Sbjct 5639 CACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTTGACTACAG 5580 Query 99705 GCAG 99708 | || Sbjct 5579 GGAG 5576 >seq52194 Length=4646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| |||||| || |||| ||||| || ||| || || ||||||||||| || Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || ||||||||||| ||||| || | || || || || | || Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| || | | | | ||||| | ||| || Sbjct 3782 ATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 3841 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 3842 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564150605764680