Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq58137 104 2e-17 seq52194 102 6e-17 seq89413 100 2e-16 seq9095 96.9 2e-15 >seq58137 Length=8097 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || | ||| ||||||||| ||||| || || | Sbjct 7759 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 7700 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||||||| || || | ||||| ||||| || ||||| | || Sbjct 7699 AGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7640 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | | | | || || | ||| || Sbjct 7639 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 7580 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||||||||| | ||||| || ||||||||||| Sbjct 7579 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7533 >seq52194 Length=4646 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| |||||||| || ||||||||| || |||||||| | | Sbjct 3434 CCACCGCGAAGACGAAGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGAC 3493 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| ||||| ||||| || |||| || | |||||| || || | ||| Sbjct 3494 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 3553 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| || || |||| | ||| || ||||| | || | Sbjct 3554 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATA--GTGTCGGATGGCTCAA 3611 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | ||| || |||||||||||||| Sbjct 3612 CCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| ||||| | |||||| ||||||||| ||||| || ||||| || || | Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||| | ||| || ||||| | ||| Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||||| | ||| || Sbjct 3782 ATTCCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 3841 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 3842 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 >seq89413 Length=986 Score = 100 bits (110), Expect = 2e-16 Identities = 198/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 6759 CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTT 6818 ||||||||||||||||| | ||| ||||| ||| || || | |||||||| || | Sbjct 965 CCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCA 906 Query 6819 CGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAGCGC 6877 |||||| || || || | || | |||| || | || | || |||| | Sbjct 905 CGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCTT--TTAAACT- 850 Query 6878 ATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATT 6937 ||| || | || || ||||| |||||||| ||||| ||||| | ||| || |||||||| Sbjct 849 ATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGTAAGATT 790 Query 6938 AGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTA 6997 ||| || || || || |||| ||| ||| || ||||||||||| || ||||| Sbjct 789 AGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTA 730 Query 6998 AGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTC 7045 || |||||||| || | | ||| | |||||| ||| ||||| Sbjct 729 GGCACCCACAACTTTTCCAGATGTTTGCTTGAACGGCTTATTTTTTTC 682 >seq9095 Length=14658 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| |||||||| || || || |||||||| || | | Sbjct 6438 CCACCCCGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 6497 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || ||| | ||||| | | || ||||| | || Sbjct 6498 AATGTGCGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 6557 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| || | | | | ||| || | |||||| Sbjct 6558 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 6617 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 6618 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 6665 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||||| || ||||||||||| || || || |||||||| || | | Sbjct 4842 CCACCTCTTAGACGCAACACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 4901 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||| ||| || || ||||||| | | || ||||| | || Sbjct 4902 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCAGGAGGA 4961 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || ||| ||||| | | | |||||| | |||||| Sbjct 4962 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5021 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || || | ||||| || || || ||||| Sbjct 5022 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5068 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||||| || ||||||||||| || || || |||||||| || | | Sbjct 5526 CCACCTCTTAGACGCAAGACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 5585 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||| ||| || || | ||||| | | || ||||| | || Sbjct 5586 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGAGGA 5645 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || ||| ||||| | | | |||||| | |||||| Sbjct 5646 ATGCCTTCTTTGTCCTGAATCTTTGCTTTAACATTTTCGATTGTGTCAGAAGCTTCCACT 5705 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || || | ||||| || || || ||||| Sbjct 5706 TCTAAGGTAATAGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 5752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346717804258247