Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq58137 102 5e-17 seq21475 102 5e-17 seq52194 100 2e-16 seq89413 95.1 8e-15 seq9095 89.7 3e-13 >seq58137 Length=8097 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||| ||||| || ||||| |||||| | ||| | || Sbjct 7745 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGTCCGTC 7686 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || ||||| || || || | ||||| || ||| | || | || |||||||| Sbjct 7685 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 7626 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||| || | | || | || | ||||| || | || ||||| Sbjct 7625 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 7566 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||||| || || ||||||||||||||||| || Sbjct 7565 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq21475 Length=13715 Score = 102 bits (112), Expect = 5e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| || |||||||| ||||| || | | ||| |||| || | Sbjct 11103 CAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTA 11044 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | ||||| || ||||| || | |||||||||||| | || | || ||||| || | Sbjct 11043 GTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGA 10984 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 | || ||| || | |||| | ||| |||||| || |||| ||| |||||||| | Sbjct 10983 TTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTAC 10924 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || ||||| Sbjct 10923 CCGTAAGGGTCTTGACGAAAATTTGCAT 10896 >seq52194 Length=4646 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| ||||||||||| || ||||| || || | || |||| Sbjct 3677 AATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCC 3736 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || || || || || || ||||| || ||| | || | ||||| ||||| Sbjct 3737 TCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCT 3796 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || | | || | || || ||||| || | || || ||| Sbjct 3797 TGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTT 3856 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| ||||||||||||||| Sbjct 3857 TTCCCTGTGAGTGTCTTTACAAAGATCTGCATA 3889 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || |||||||| ||||| || | || |||| |||| |||||| || ||||| Sbjct 3469 TTCTTTTTGGATGTTATAATCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAA 3528 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | ||||||||||| ||||| || || Sbjct 3529 GATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATT 3588 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | |||||| || | || ||||| || || || |||||||| || Sbjct 3589 TTCGATAGTGTCGGATGGCTCAACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAAC 3648 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 3649 GAAGATCTGCATA 3661 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| | | | ||| |||| ||||||||||| |||||||| Sbjct 4387 TCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCTTCCAGCTGTTTGCCGGCAAAG 4446 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || ||| | || | ||||| || || |||||| || || | Sbjct 4447 ATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTT 4506 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||||| || || || || || ||||| ||| Sbjct 4507 TCAATGGTGTCAGACGGCTCTACTTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACA 4566 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 4567 AATATTTGCATA 4578 >seq89413 Length=986 Score = 95.1 bits (104), Expect = 8e-15 Identities = 172/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 6293 CCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCG 6352 ||||| ||||||||||| || || ||||| ||||| || || |||||||| || Sbjct 965 CCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCA 906 Query 6353 CGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATCTGCTTGAGGGCGT 6410 || || ||||| |||||| || | || | || | |||| || | | Sbjct 905 CGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG--ATCTCTTTTAAACTAT 848 Query 6411 CGTTTATGCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAG 6470 | || ||||||| ||| || ||||||||||| || ||||| |||| ||| || ||||||| Sbjct 847 CATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAGTGAGTAAGATTAG 788 Query 6471 GTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACG 6530 |||| |||| || | ||| || | || ||| || ||||| || ||||| || | Sbjct 787 GTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGG 728 Query 6531 CACCGACGAC 6540 |||| || || Sbjct 727 CACCCACAAC 718 >seq9095 Length=14658 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || || || | ||| |||| || ||||| ||||| ||||| Sbjct 6245 TTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAA 6304 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| ||| | || | ||||| || || ||| ||| ||| || Sbjct 6305 AATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATT 6364 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || || || || || || || ||||| || Sbjct 6365 TTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 6424 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 6425 GAAAATTTGCAT 6436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || || | ||| |||| || || |||||||| || || Sbjct 5105 TTCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAA 5164 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | || |||||| | || | ||||||||| || ||| || ||| || Sbjct 5165 AATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCTTTAACATT 5224 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || || ||||| || || || || || || Sbjct 5225 TTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTAC 5284 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 5285 AAAAATTTGCAT 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324024465527352