Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4562 535 5e-147 seq7375 136 4e-27 seq7176 98.7 1e-15 >seq4562 Length=21325 Score = 535 bits (592), Expect = 5e-147 Identities = 1193/1789 (67%), Gaps = 27/1789 (2%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 || ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| || Sbjct 21099 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 21040 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || || |||||||| | |||| | | |||||| || || | ||| Sbjct 21039 GTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 20980 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| |||||| | || ||| || || | ||||||||| || || ||||| || ||||| Sbjct 20979 ATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 20920 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201 |||||||||||| | || | ||| ||| ||||||||||| ||||| || | Sbjct 20919 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 20862 Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258 | | | || |||| || | || | | | ||| |||||||| ||| | |||||| Sbjct 20861 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 20802 Query 47259 ttgttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 |||||| | ||||| || || || ||| || | | ||||||| Sbjct 20801 AGGTTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 20745 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || | ||||||||||||||| ||||| | || ||||| |||| | Sbjct 20744 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 20685 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 ||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | || Sbjct 20684 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCT 20625 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | |||| ||| | | |||| |||| ||||| ||| ||| Sbjct 20624 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCC 20565 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 ||||| |||| ||| | ||| | |||||| || || || |||| ||| ||| Sbjct 20564 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 20505 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 || | |||||| | || | ||| | | || ||| | ||||||||| ||||| | | Sbjct 20504 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAGT 20445 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674 |||| |||||| || ||||||||||||| | || ||| |||||| || | ||| Sbjct 20444 GCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 20386 Query 47675 AAAAGGATANNNNNNNNNNNNNAAT-GTATCTGCCAATCCTTGAACACCAATACCAATTG 47733 ||| ||| || | |||||||| || ||||||||||||||||| | Sbjct 20385 GTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAG 20327 Query 47734 GTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAA 47793 ||||||| | |||| ||| | ||||| || | ||||| || | ||| |||| Sbjct 20326 GTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAA 20267 Query 47794 TTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACT 47853 ||| |||| | |||||| ||||||| ||||||| ||| Sbjct 20266 CTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATC 20207 Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 |||||||| ||||||| | ||||||||||| || || || || || || || || |||| Sbjct 20206 TGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 20147 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 | ||| ||||| | | || | || ||||| | |||||| ||||| || | || Sbjct 20146 CTTCTGAAGTGTATTGCACAACCTCTGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 20087 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| |||||| | ||||||| || ||||| || | ||| | ||||| ||||| | Sbjct 20086 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 20027 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCT 48092 | | || | ||| || || || ||||| | | || | ||| | | | || | Sbjct 20026 CCACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAAT 19968 Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT 48152 || || | ||| ||||| |||||||| | |||||||| || ||| | | | | Sbjct 19967 CGTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCTCCAAAGCAGTCAGCG 19908 Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 | ||||||| |||| ||||||||| | |||| | ||||| |||| |||||| || Sbjct 19907 AGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTTTTTCTACTCTTTTC 19848 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || Sbjct 19847 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 19788 Query 48273 CCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || | ||| | ||||| | |||||| || | ||| || |||||||| || |||||||| Sbjct 19787 CCTGTGTTCTTCTTTAAATCCAAGAAT-TCAAATATGTCCGCATGCCAAGGCTCTAAATA 19729 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 ||||| | | | || || ||||| || || |||||||||| |||||||||||||||||| Sbjct 19728 AATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 19669 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| ||||| |||||||| || | |||||| || | ||||| || || | || ||| Sbjct 19668 ATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGA 19609 Query 48452 TCCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || |||||| || || || || || |||||| ||||| || |||||| || Sbjct 19608 ACCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAAT 19552 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| || Sbjct 19551 TAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTAT 19492 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 || ||||| || | || || | || ||| || | ||| || ||| Sbjct 19491 AAGGAAACAGGAGGAAAGCTGTGGCCGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGC 19432 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 ||| |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 19431 ATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTC 19372 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||| || ||||| || || | ||| | ||| | |||||| |||||| Sbjct 19371 ACCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 19323 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| ||||| |||||||||||||||||| Sbjct 18969 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 18910 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 18909 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 18860 >seq7375 Length=9560 Score = 136 bits (150), Expect = 4e-27 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || |||||| |||||| |||||||||| |||||| ||||| || ||||| Sbjct 4028 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 3969 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || || || || || ||||| || | || || || | || | || ||||| || Sbjct 3968 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTCCACCAAGTT 3909 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| ||||||||| |||||||| ||||| || ||||||||||| Sbjct 3908 CTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAGACATGCTTGATAAAATGTTT 3849 Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439 || |||| ||||||| | |||||| Sbjct 3848 CTCACAATCT---TTTAATGTCTCCCAATC 3822 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | |||||| || || || || |||||||| |||| ||||| Sbjct 4859 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 4800 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||| |||||||| || || || ||||| || || || |||||||||| Sbjct 4799 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAG 4740 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||||||| | |||| || | ||||| | | ||||| || | Sbjct 4739 CAATTATACGTTCTCCAAATGTAGCCGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 4680 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| || |||||||| | || || || | ||| |||| Sbjct 4679 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 4638 Score = 96.9 bits (106), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| ||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 3674 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 3616 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||||||||| ||||||| || || |||||||| || Sbjct 3615 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACGAA 3573 >seq7176 Length=6331 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/365 (67%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || ||||| || ||| | || | || || || | || | | Sbjct 2581 ATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 2638 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || ||||||||||| |||||||| || || || | Sbjct 2639 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2698 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 2699 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2758 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTT-ATT 136870 ||||| | || |||| || ||| | || ||||| ||| || | | || ||| || Sbjct 2759 AAGTTAGTCATTTTAAAGATTATTTGCCCAAAGCATTTCCTAAAGGA-GATGACTTGATC 2817 Query 136871 TTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGT 136927 || ||| | ||| || | | || ||| |||| | |||||||| || || || | Sbjct 2818 TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACA 2877 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 || ||||| || ||| | |||| ||| ||| | | | || |||| | |||||||| Sbjct 2878 TTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGAT 2937 Query 136988 TGTTT 136992 || || Sbjct 2938 TGCTT 2942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561027028640760