Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq9095 107 2e-18 seq52194 104 2e-17 seq58137 98.7 8e-16 seq89413 95.1 1e-14 seq133270 91.5 1e-13 >seq9095 Length=14658 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | || || ||||| || || ||| |||| |||| Sbjct 6209 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6150 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| || |||||||| | ||| |||||| Sbjct 6149 TGATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCA 6090 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| |||||||| ||||| || || || | |||||| ||| | | || || || Sbjct 6089 ACAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 6030 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||| || ||||||||| |||| ||||| || Sbjct 6029 TATTCAGAAGGAATCTACTTTGCATCTGGTACTA 5996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || ||||| ||| | || || || || || || ||| || ||||| Sbjct 6437 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTC 6378 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || || ||||||||| | ||| ||||| Sbjct 6377 TGATACAATTGAAAATGTTAAAGCGAAAATTCAG-GATAAAGAGGGAATTCCCCCAGATC 6319 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTA 28729 | || |||||||| ||||| || || || | |||||| | | ||||| | ||||| Sbjct 6318 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTAT--CTGATTA 6261 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||| |||||||||||| ||||| | ||| || Sbjct 6260 CAACATTCAGAAAGAATCTACTTTGCACCTAGTACTA 6224 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || |||||||| ||||| ||| || ||||| Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 5237 Query 28614 GAGACGGTGGCCGAT-CTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||||||||| || || || ||||| | ||| ||| || Sbjct 5236 GACACAATTGAAAATGTTAAAGCAAAAATTC-AAGATAAGGAGGGGATTCCCCCAGACCA 5178 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 |||||| ||||| || || || |||||| | |||||| | | ||||| | || || Sbjct 5177 ACAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTAT--CAGACTAC 5120 Query 28731 AACATTCAAAAAGAATCTACT 28751 |||||||| || ||||||||| Sbjct 5119 AACATTCAGAAGGAATCTACT 5099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || ||||| ||| | || || ||||| || || ||| |||| |||| Sbjct 4841 AATGCAAATTTTCGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 4782 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| ||||| || || | || |||||| Sbjct 4781 TGATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 4722 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||| || ||||| || || ||| |||||||| || || | || ||||| Sbjct 4721 ACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAGACTATAA 4662 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || |||||||||||||| ||| | || | ||| | |||| || Sbjct 4661 TATCCAGAAAGAATCTACTCTTCACCTTGTTCTCAGACTTAGAGGTGG 4614 >seq52194 Length=4646 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| ||||| ||| Sbjct 3888 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 3829 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| |||||||||||| | ||| ||||||| Sbjct 3828 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAA 3769 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || ||||| || |||| ||| | ||| | | || || || Sbjct 3768 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 3709 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || ||| ||||| |||||||| | ||||||||||| || Sbjct 3708 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGGTAT 3659 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||| |||||| | || |||||||| || ||||| ||||| Sbjct 3567 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTCATCTTTGCTGGTAAACAGTTGGAG 3508 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||| || | ||||||||||| |||||||||||||| |||| Sbjct 3507 GATGGCCGCACTCTGTCGGATTATAACATCCAAAAAGAATCTACCTTGCA 3458 >seq58137 Length=8097 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| |||||| | ||||||||||||||||| ||| |||||| Sbjct 7530 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 7589 Query 28611 TCAGAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | |||| |||| || ||||| || || | || ||| Sbjct 7590 TCCGATACTATTGAAAATGTAAAAGCCAAAATTC-AAGACAAGGAAGGCATTCCTCCAGA 7648 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | || || || || || ||||||||||| || | | || || Sbjct 7649 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTA 7708 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || |||||||||||||||||||| ||| ||||||| Sbjct 7709 CAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 7744 >seq89413 Length=986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 106732 GGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGA 106791 ||||||||||| | |||| |||||||| || || |||| || ||||| |||||||| Sbjct 986 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 927 Query 106792 ATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCC 106851 || || ||||| || || | || || | || || || | | || ||||| || Sbjct 926 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 867 Query 106852 GGTATTGTTTTTAAGGCATCGTTTATTCCATCACCGCCGCAGATGGGAATAAAACCGTAC 106911 || |||||| ||| || || || ||||||||||| || |||||||| ||||| Sbjct 866 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAG 807 Query 106912 AATAAATGTGATAAATTGGGCAGCGGGACTTTATCTACGGGAAAATTGCGGCCATACACG 106971 | || || | | ||| || | || | ||||||||| || || | ||| || Sbjct 806 AGCAAGTGAGTAAGATTAGGTATAGGTATACGATCTACGGGGAATTTCCTAGGATAGACA 747 Query 106972 CCCCATTCGACAAAATACGC 106991 |||||||| || || || || Sbjct 746 CCCCATTCTACGAAGTAGGC 727 >seq133270 Length=334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| |||||||| || | || |||||||| | ||||| ||||||||||| Sbjct 327 AAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAACAACGTCTTATTTTTGCGGGCAAG 268 Query 28698 CAATTGGAAGAT--TCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGC 28755 ||||| |||||| || | ||||| | || || ||||| ||||||||||||||| ||| Sbjct 267 CAATTAGAAGATGGTCGTACACTAT--CTGACTACAACATCCAAAAAGAATCTACTTTGC 210 Query 28756 ACATGGTATTAAGATTACGAGGAGGGAT 28783 || | ||| | | ||| |||| || || Sbjct 209 ACTTAGTACTTCGTTTAAGAGGTGGTAT 182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || ||||||||| ||| |||||| || Sbjct 183 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 124 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||||||||| | || ||||| Sbjct 123 GATACTATTGAAAATGTAAAAGCTAAAATTCAA-GACAAAGAGGGCATCCCTCCTGATCA 65 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709 ||| | ||||||||||| || || |||||||||||| Sbjct 64 GCAGCGTCTTATCTTTGCCGGTAAGCAATTGGAAGAT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424606580935461