Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4562 178 7e-40 >seq4562 Length=21325 Score = 178 bits (196), Expect = 7e-40 Identities = 281/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 |||| | ||| || || ||| | | |||||| | |||||| ||||| | |||||||| Sbjct 19875 CCAAACTTCATCTTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAA 19816 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAA 26024 | ||||| |||||||||||||| || || ||| ||||| |||| ||| ||||| |||| Sbjct 19815 CAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAATTCAA 19757 Query 26025 AAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCAC 26084 | || || | ||||| || |||||||| || ||||| || | ||| ||||| Sbjct 19756 ATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCAC 19697 Query 26085 CTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTG 26144 |||||||||| ||||| ||||| | || | ||| |||||||||| |||| ||| | | Sbjct 19696 CTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTCG 19637 Query 26145 AAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATAC 26204 | | || || |||| | || | || || | ||| || || | ||| | || Sbjct 19636 AGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGTATGTAAAC 19577 Query 26205 CGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTT 26264 | || |||||||| |||| ||||| |||||| | | | ||||| ||||| |||| Sbjct 19576 CTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTT 19517 Query 26265 TTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304 |||||||| ||||||| ||| | ||||| || || Sbjct 19516 CAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGA 19477 Score = 116 bits (128), Expect = 2e-21 Identities = 351/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 24645 CGATATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAA 24701 || |||||| |||| |||| ||||| || |||| | |||||||||| || | ||| Sbjct 21102 CGTTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAA 21043 Query 24702 GATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT 24761 | || |||||||| ||||| || | | |||||| ||| ||||| || || || |||| Sbjct 21042 G-TAGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTT 20984 Query 24762 TTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821 || || ||| | | | | | | ||| | |||||| |||| | |||| | Sbjct 20983 TTCCATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTC 20924 Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881 |||||| || || | | ||| ||||||| || || || | | |||||||| Sbjct 20923 CTCTATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACA 20864 Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AA 24939 ||| |||| || | ||||| || |||| | ||| | |||||||| || | | || Sbjct 20863 AATCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAA 20804 Query 24940 TA-GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT-TCAAGATCTCTAATCAAG 24997 || | || | |||||| ||| | || | |||| ||| | | | Sbjct 20803 TAAGGTT---TTTCATATCTTCATCCCACAAATCAGCCCGAGTCAA-ATCAGTCAGAAGA 20748 Query 24998 TGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAG 25055 || | || | | | |||||||||||| || |||||||| ||| ||| ||||| | Sbjct 20747 TGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGATG 20690 Query 25056 TGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTA 25115 | || ||||||||| ||||| | || || | ||||| | |||||| || || ||||| Sbjct 20689 TAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAG 20630 Query 25116 ATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||||| ||||| ||||| | |||||||| ||| | |||| || ||| Sbjct 20629 GAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 20581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252565201990925