Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq47188 176 1e-38 seq4911 129 2e-24 seq4562 116 1e-20 >seq47188 Length=17172 Score = 176 bits (194), Expect = 1e-38 Identities = 342/497 (69%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 14416 CCTATCAAATCTACCAGGTCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTGGC 14475 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| || || |||||||| || || ||| Sbjct 14476 AGCTAATACTACAACA--TTGGTTGTTGTATTGAAACCATCCATTTCCACTAGAAGCTGA 14533 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || | ||| ||| || || || | || | | | || ||| ||||| Sbjct 14534 TTAAGAGTATTTTCTTGTTCTGAAT--GACCCCCA--AAACTTCTGCCTC-CTC-TTTTT 14587 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||| ||||| ||||| || | | ||| |||| || || | || ||| Sbjct 14588 CTACCAACAGCATCTATTTCATCAATAAATAATATACAGGGAGCATGTTTCCGTGCCATT 14647 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || || || | || | |||| ||||||| ||||||||| ||| || ||| Sbjct 14648 GAGAACATATCCCTGACCCTAGAAGGACCAACACCAACAAACATTTCTAAAAACTCTGAA 14707 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||||| ||| || | ||||| || || || ||| ||| | || ||||| || Sbjct 14708 CCTGATACTGTAATAAAGGGAACATTAGCCTCTCCAGCTGTTGCTTTAGCTAGAAGAGTT 14767 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| |||||||| ||||| ||||| ||||||| || | ||| || || | Sbjct 14768 TTACCAGTTCCAGGGGGTCCTGTTAATAAGGCTCCCTTAGGAATTTTAGCTCCTAAATCA 14827 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 |||||| || |||| |||| || || | |||| |||| || |||| ||| || || Sbjct 14828 ATATATTGCTGAGGGTTCTTCAAGAAATTGACAAATTCCATAATTTCAATTTTAGCTTCC 14887 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 14888 TCACAACCAGCTACATC 14904 >seq4911 Length=48505 Score = 129 bits (142), Expect = 2e-24 Identities = 209/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | ||||| || || ||||| ||| ||||||||||| ||||| ||||||| Sbjct 20790 ATCATAATGTACCATAACTGACT-CCATAGCCTTTATTAAACGACGTTGAATGTAACCAG 20848 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 || || ||||||||||| |||||||| ||||| ||||||| |||||||| ||||| Sbjct 20849 TTTCAGCAGTTTTTACAGCGGTATCAATGAGACCTTCACGACCTCCCATAGCGTGGAAAT 20908 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||| ||| | || ||| | || | || |||||||| | | || | Sbjct 20909 AAAACTCAGAGGGTGTCAAGCCGGCAAGGTATGAATTTTCGACGAAACCTCTGGATTCTG 20968 Query 302732 G--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | || ||||||| ||| | || ||||||| || || || | | ||| | || | Sbjct 20969 GACCGTAATCGTC---TTTGATGAAATGTGGCAATGTTCTTTTACGAAAACCGAACGGAA 21025 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| ||||||||||| || || | || | ||| | ||| || || || Sbjct 21026 TACGCTTTCCTTCAACGTTCTGTTGCCCTACACAAGCAATAACCTGTGAGATGTT 21080 >seq4562 Length=21325 Score = 116 bits (128), Expect = 1e-20 Identities = 570/895 (64%), Gaps = 28/895 (3%) Strand=Plus/Minus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || |||||||| |||||||||| || ||||||||| || || ||| ||| || | Sbjct 20288 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTAC-AAT--CTTTGTGATT 20232 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| |||||| | | | |||| | |||| ||| |||||||| ||| | || Sbjct 20231 TCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCA---ACAAACATGTTAAGTGCTATG 20175 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || || || || || | || |||||| |||| ||| ||| Sbjct 20174 GAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCTGTGCAA 20115 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || ||||| | ||| || || ||| || ||||||||||||||| Sbjct 20114 AGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCC 20055 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT---CTTTAGCCAG 155768 || || | |||||||| || || ||||||| || || || | ||| ||| ||| Sbjct 20054 TTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTT---CCAT 19998 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC 155828 | || | || | | ||| || | ||| ||| |||||||| |||| | Sbjct 19997 AACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTCTTCATATTTGGTATATAA- 19939 Query 155829 GTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 ||| || ||||| || | || ||| || ||||| | | || || || | | Sbjct 19938 -TTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACTGTCATGAGGACACATGA 19880 Query 155887 GCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 | ||||| || || ||| | | |||||| | ||| ||| | ||||| Sbjct 19879 GACTCCAAACTTCATCTTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCAT 19820 Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAAT 156005 | || || || || || | || || | || ||| |||||| || || |||||| Sbjct 19819 AAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAAT 19761 Query 156006 TCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG--- 156062 || || || | ||| ||||| | ||| || ||||| || | ||| Sbjct 19760 TCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTT 19701 Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||| ||||||||||| | ||||| || || | || | | ||| || | | |||| Sbjct 19700 CCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCA 19641 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATT--ATGAATAT 156180 || || ||||| || || || | ||||| ||||| || ||| ||| Sbjct 19640 TTCGAGACCCCATTAGTGCCAGCTATGTAAGAACCC--TGAGCTCTGATGCAATGTGTAT 19583 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 ||| || || ||||| | ||||||||||| || |||| |||| ||||| |||| Sbjct 19582 GTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAA 19523 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||||||||| ||| |||| ||| | || || | || || | || || || | Sbjct 19522 TACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGCCGCG 19463 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 |||| | ||| ||| |||||||| ||||||| ||||||| || | ||||| Sbjct 19462 GTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACAT 19408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468914293062183