Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2
02015-12-17] 153,959 sequences; 293,608,641 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq27008 251 6e-62
seq9095 116 3e-21
seq89413 111 1e-19
seq21475 93.3 3e-14
seq52194 87.8 1e-12
>seq27008
Length=12848
Score = 251 bits (278), Expect = 6e-62
Identities = 369/519 (71%), Gaps = 20/519 (4%)
Strand=Plus/Minus
Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627
|| || |||| || ||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 4776 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 4717
Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687
|||||| |||| | ||||||||| || || || || ||| | |||||||| |||
Sbjct 4716 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAG 4657
Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC--------GCGCT-GCCCGCCGGC--- 103732
|| || |||||| ||| | ||||| |||| |||||| |
Sbjct 4656 TGCCCCTTCCTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCTCG 4597
Query 103733 CTTGCGATGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGC 103792
|| ||| | || || ||||||||||| ||| |||||| ||| || | || ||
Sbjct 4596 CTCGCGCCCGCTGGCCACGACGAGTGCGGGGTGCGCGCGCCCCCGCCCGC----GCTGGC 4541
Query 103793 GTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAAC 103851
| | ||||||||||||||| |||| | || | |||||||||||| | | | | |
Sbjct 4540 GCCCCGCATGCCCGGCCCCGTGCACTCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCAG 4481
Query 103852 TTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATT 103911
|| | || ||||| || ||| |||| ||||| || ||| | | |||||||| |||||
Sbjct 4480 CTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATT 4421
Query 103912 CTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGA 103971
|| |||||||||||| | ||||| || || ||||||||||| ||||| || || |||||
Sbjct 4420 CTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGA 4361
Query 103972 TTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATA 104031
|||||| |||| || | ||||||| | || ||||||| | || ||| ||||| ||
Sbjct 4360 CTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTA 4301
Query 104032 CGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070
||||| || ||||| |||| || || || || |||||
Sbjct 4300 CGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 4262
>seq9095
Length=14658
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||| ||||| | || |||||||| |||||| | ||| ||| |||
Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || ||| ||||||| || ||||||||| | || |||||
Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| |||| ||| || || || ||||| || | ||| || | ||||| ||
Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 4889
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || ||||||||||| ||||| | |||||| | | |||| ||||
Sbjct 4888 ATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGGAA 4840
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || ||||||||||| || |||||||| || | ||| ||| |||
Sbjct 6664 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 6605
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | ||||| ||||||| || || |||||| | || |||||
Sbjct 6604 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6545
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| |||| || || || || || || || | ||| || | ||||| ||
Sbjct 6544 CAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCAGACTATAAT 6485
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || ||||||||||| |||||| |||||||| | | || || ||||
Sbjct 6484 ATCCAGAAGGAGTCTACTTTGCACTTGGTGTTGCGTCTACGGGGTGGAA 6436
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||| ||||| | || |||||||| |||||| | ||| ||| |||
Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || ||| ||||||| || ||||||||| | || |||||
Sbjct 5692 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 5633
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| |||| || || || || ||||| || | ||| || | ||||| ||
Sbjct 5632 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 5573
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || ||||||||||| ||||| | || ||| | | |||| ||||
Sbjct 5572 ATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGAA 5524
Score = 87.8 bits (96), Expect = 1e-12
Identities = 171/252 (68%), Gaps = 12/252 (5%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||||||||| || || || | || ||||| || || || | ||| ||| ||
Sbjct 6437 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTC 6378
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || ||| || ||| |||||||| || | ||| |||||
Sbjct 6377 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 6318
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730
||| |||||||||| ||| || || ||||| || |||||| ||| | | || |
Sbjct 6317 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGC----ACACTATCTGATT 6262
Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790
|||||||||| || || ||||| |||||| | || | | || |||| || |||
Sbjct 6261 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 6206
Query 107791 AAAATATTTGTA 107802
|||||||||||
Sbjct 6205 CAAATATTTGTA 6194
>seq89413
Length=986
Score = 111 bits (122), Expect = 1e-19
Identities = 181/261 (69%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131
||| || || ||||||||||| || ||| | || || || ||||| | || |
Sbjct 726 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTAGATCGTATACCTAT 785
Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191
|| || || | || || | ||||| || || || ||||||||||| ||||| ||||
Sbjct 786 ACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 845
Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251
|| | ||| || |||||||| | || || || || || || | |||||
Sbjct 846 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 905
Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311
| || ||||||||| | || |||||||| ||||| || |||||||||| ||||| ||
Sbjct 906 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 965
Query 29312 CGTGTCTGCGTGGAACGAGCC 29332
||||| | |||||||||||
Sbjct 966 ATTGTCTTCATGGAACGAGCC 986
>seq21475
Length=13715
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||||||||| ||||| || | || || |||||||||||| |||| ||||||
Sbjct 10895 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 10954
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| | | | |||||| || || ||||| ||||| | || || ||
Sbjct 10955 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 11014
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| | | || | ||| |||||||| || || || | ||| || | ||||||||
Sbjct 11015 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 11074
Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758
|||||||||||| || || |||||
Sbjct 11075 CATTCAAAAGGAATCCACATTGCA 11098
>seq52194
Length=4646
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/246 (68%), Gaps = 4/246 (2%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| |||||||| || |||||||||| || || || | ||| ||| |
Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCT 4518
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | ||||| |||||| |||||||| || | ||| |||||
Sbjct 4517 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 4458
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | ||||| | ||| || ||||||||||| || | || | |||||||||||
Sbjct 4457 CAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAAC 4398
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795
|| |||||||||||||| | || | || || | ||||||| || || ||||
Sbjct 4397 ATCCAAAAGGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 4342
Query 107796 ATTTGT 107801
||||||
Sbjct 4341 ATTTGT 4336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398128357419751
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