Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq27008 251 6e-62 seq9095 116 3e-21 seq89413 111 1e-19 seq21475 93.3 3e-14 seq52194 87.8 1e-12 >seq27008 Length=12848 Score = 251 bits (278), Expect = 6e-62 Identities = 369/519 (71%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| || ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 4776 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 4717 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || ||| | |||||||| ||| Sbjct 4716 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAG 4657 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC--------GCGCT-GCCCGCCGGC--- 103732 || || |||||| ||| | ||||| |||| |||||| | Sbjct 4656 TGCCCCTTCCTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCTCG 4597 Query 103733 CTTGCGATGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGC 103792 || ||| | || || ||||||||||| ||| |||||| ||| || | || || Sbjct 4596 CTCGCGCCCGCTGGCCACGACGAGTGCGGGGTGCGCGCGCCCCCGCCCGC----GCTGGC 4541 Query 103793 GTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAAC 103851 | | ||||||||||||||| |||| | || | |||||||||||| | | | | | Sbjct 4540 GCCCCGCATGCCCGGCCCCGTGCACTCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCAG 4481 Query 103852 TTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATT 103911 || | || ||||| || ||| |||| ||||| || ||| | | |||||||| ||||| Sbjct 4480 CTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATT 4421 Query 103912 CTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGA 103971 || |||||||||||| | ||||| || || ||||||||||| ||||| || || ||||| Sbjct 4420 CTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGA 4361 Query 103972 TTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATA 104031 |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| || Sbjct 4360 CTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTA 4301 Query 104032 CGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 ||||| || ||||| |||| || || || || ||||| Sbjct 4300 CGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 4262 >seq9095 Length=14658 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || |||||||| |||||| | ||| ||| ||| Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||||| || ||||||||| | || ||||| Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| ||| || || || ||||| || | ||| || | ||||| || Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 4889 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| ||||| | |||||| | | |||| |||| Sbjct 4888 ATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGGAA 4840 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||||||||| || |||||||| || | ||| ||| ||| Sbjct 6664 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 6605 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| ||||||| || || |||||| | || ||||| Sbjct 6604 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6545 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || || || || | ||| || | ||||| || Sbjct 6544 CAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCAGACTATAAT 6485 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| |||||| |||||||| | | || || |||| Sbjct 6484 ATCCAGAAGGAGTCTACTTTGCACTTGGTGTTGCGTCTACGGGGTGGAA 6436 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || |||||||| |||||| | ||| ||| ||| Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||||||| || ||||||||| | || ||||| Sbjct 5692 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 5633 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || ||||| || | ||| || | ||||| || Sbjct 5632 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 5573 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| ||||| | || ||| | | |||| |||| Sbjct 5572 ATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGTCTAAGAGGTGGAA 5524 Score = 87.8 bits (96), Expect = 1e-12 Identities = 171/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || | || ||||| || || || | ||| ||| || Sbjct 6437 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTC 6378 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| || ||| |||||||| || | ||| ||||| Sbjct 6377 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 6318 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | || | Sbjct 6317 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGC----ACACTATCTGATT 6262 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||||||||| || || ||||| |||||| | || | | || |||| || ||| Sbjct 6261 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 6206 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 6205 CAAATATTTGTA 6194 >seq89413 Length=986 Score = 111 bits (122), Expect = 1e-19 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || || ||||||||||| || ||| | || || || ||||| | || | Sbjct 726 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTAGATCGTATACCTAT 785 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | || || | ||||| || || || ||||||||||| ||||| |||| Sbjct 786 ACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 845 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 || | ||| || |||||||| | || || || || || || | ||||| Sbjct 846 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 905 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 | || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 906 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 965 Query 29312 CGTGTCTGCGTGGAACGAGCC 29332 ||||| | ||||||||||| Sbjct 966 ATTGTCTTCATGGAACGAGCC 986 >seq21475 Length=13715 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| |||| |||||| Sbjct 10895 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 10954 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | |||||| || || ||||| ||||| | || || || Sbjct 10955 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 11014 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||| || || || | ||| || | |||||||| Sbjct 11015 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 11074 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||||| || || ||||| Sbjct 11075 CATTCAAAAGGAATCCACATTGCA 11098 >seq52194 Length=4646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || |||||||||| || || || | ||| ||| | Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCT 4518 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||| |||||||| || | ||| ||||| Sbjct 4517 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 4458 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||| | ||| || ||||||||||| || | || | ||||||||||| Sbjct 4457 CAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAAC 4398 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || |||||||||||||| | || | || || | ||||||| || || |||| Sbjct 4397 ATCCAAAAGGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 4342 Query 107796 ATTTGT 107801 |||||| Sbjct 4341 ATTTGT 4336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398128357419751