Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4562 178 3e-39 seq4911 113 1e-19 >seq4562 Length=21325 Score = 178 bits (196), Expect = 3e-39 Identities = 428/644 (66%), Gaps = 13/644 (2%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || || || ||| ||| || || || ||| ||||||||||||| |||| || | ||| Sbjct 19480 TCCTGTTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGTATTTTTGATACTTTAAAA 19539 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT----ATTCACGTT-CATGATA 110634 || ||| | ||||||||| |||| || || ||| || ||| || ||| | | Sbjct 19540 CAATGTGCATTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 19599 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 ||||| || | | || || | || || | || | ||| || || |||| Sbjct 19600 ---GCTCAG--GGTTCTTACATAGCTGGCACTAATGGGGTCTCGAATGGTCTAGTGCCAA 19654 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---G 110751 |||| ||||| | ||| | ||||| | |||||| |||||||||| || | | | | Sbjct 19655 TGTTGAGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCG 19714 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 || ||||||| || ||| | || ||||||||| | || |||||||||||||| || | Sbjct 19715 GCGCATTTGCAATTTATTTAGAGCCTTGGCATGCGGACATATTTGAATTCTTGGATTTAA 19774 Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871 || || ||| |||||| ||||| | || | |||||||| | ||||| Sbjct 19775 AGAAGAACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATAC 19834 Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931 ||||| | || |||||| | || || || ||| | ||| ||| |||||||||||| Sbjct 19835 CAGATCTGTTTATGAAAAGAGTAGAAAAAGATGAAGTTTGGAGTCTCATGTGTCCTCATG 19894 Query 110932 GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 |||||| || |||| | |||| | || |||||||| | || ||||||| Sbjct 19895 ACAGTCCTGGCCTCGCTGACTGCTTTGGAGAGGAATTTGAAGAATTATATACCAAATATG 19954 Query 110992 AAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 || ||||| ||| |||||| | ||||||||| | ||| ||| | | Sbjct 19955 AAGAAGAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAG 20014 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 || | ||||| || ||||| || || || || |||||||| ||| | ||| | || Sbjct 20015 AAGCCCAAGTGGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGA 20074 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 20075 GTAATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 20118 >seq4911 Length=48505 Score = 113 bits (124), Expect = 1e-19 Identities = 347/520 (67%), Gaps = 34/520 (7%) Strand=Plus/Minus Query 304982 CGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTT 305041 ||| | ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| Sbjct 22394 CGCTTAAAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTT 22335 Query 305042 AGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCC 305100 ||| |||| |||||||| |||||| || || ||| || || || || ||||||| || Sbjct 22334 TCTGCCAGAACCGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCC 22276 Query 305101 AATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAAC 305159 |||||| ||| ||||||| ||||| ||| | || | || ||| | | Sbjct 22275 TCGCTCTATTGCTCAAAATTTAACATTCCCAGAACTAGTAACACCATTTAA-TATAGACC 22217 Query 305160 ATTTG-AGACGTTGTGTTCTTAATGGAAATAGCA-AGTATCCAGGTGCTCGTGCTGTTAT 305217 || || |||| |||| || |||||| ||| ||||||||||||| ||| Sbjct 22216 GAATGCAGGAGTTG-GTTCGTAGGGGAAAT-GCACAGTATCCAGGTGCAAAG-----TAT 22164 Query 305218 AAAACACAAGCAAAAGAAGACA--ATATCTTTGAACCATATCGATTTAAAACAATTCAGT 305275 | | | | || | ||| | ||| | ||| | || || ||| | || ||| Sbjct 22163 ATAGTTCGTGATAATGGAGAAAGAATAGATCTGAGG--TTTC-ATCCAAAGCCAT-CAG- 22109 Query 305276 AAAATGCTTGAAATTAATGATATTGTTATCA--------GACATTTGAATGACAATGATT 305327 || ||| | ||| |||| |||| | | || |||| || | |||| Sbjct 22108 ---AT--TTGCATTTACA-ATATGGTTACAAAGTGGAGCGTCACTTGAGAGATGACGATT 22055 Query 305328 GGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCA 305387 |||| | |||||| | || ||| | |||| |||||| |||||||| ||| | || | Sbjct 22054 TGGTTATTTTCAATCGACAGCCAACTTTGCACAAAATGAGTATGATGGGTCACAGGGTGA 21995 Query 305388 AAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 ||||||| | | | |||||||| | ||| | ||| | |||| || ||||| | Sbjct 21994 AAGTATTGCCGTGGTCCACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTG 21935 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| || || ||||||||| | |||||||||||||| Sbjct 21934 ATTTTGACGGCGACGAAATGAATTTACATGTACCTCAATC 21895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184471693441599