Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9095 149 1e-30 seq52194 127 5e-24 seq58137 114 3e-20 seq133270 86.0 1e-11 >seq9095 Length=14658 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||||||||||||||||| |||||| ||| | ||| Sbjct 4825 AAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTGATACAATAGAAAAT 4766 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| || || |||||||| || || Sbjct 4765 GTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGACTGATTTTT 4706 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| |||||||||| | || ||| | || || || |||||||||| ||| Sbjct 4705 GCTGGAAAGCAACTGGAAGATGGGCGTACATTGTCAGACTATAATATCCAGAAAGAATCT 4646 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||||||| | |||||| || Sbjct 4645 ACTCTTCACCTTGTTCTCAGACTTAGA 4619 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| |||||| ||| ||||| Sbjct 6649 AAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGATACAATCGAAAAC 6590 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||||||| || ||||| ||| || || |||||||| || ||| Sbjct 6589 GTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAAAGACTGATTTTC 6530 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | |||||||| | || ||| | || || || ||||||| |||||| Sbjct 6529 GCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCAGACTATAATATCCAGAAGGAGTCT 6470 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || ||| | || || Sbjct 6469 ACTTTGCACTTGGTGTTGCGTCTACG 6444 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||||| ||||| || |||||| ||| | ||| Sbjct 6421 AAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGAGCCTTCTGATACAATTGAAAAT 6362 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || ||||| |||||| || || ||||||||||| || Sbjct 6361 GTTAAAGCGAAA-ATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTATTTT 6303 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| | ||||||||| | || | | ||||||||| | |||||||| || Sbjct 6302 TGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAACATTCAGAAAGAATC 6243 Query 206364 TACTCTTCACCTTGT 206378 |||| | ||||| || Sbjct 6242 TACTTTGCACCTAGT 6228 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| || || || ||||| ||||| |||||||||||| |||||| Sbjct 6205 CAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTCTGAT 6146 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || || || || ||||| || ||| || || ||| Sbjct 6145 ACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCAACAA 6086 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || ||||||||| | ||||||||| | ||| | | || ||||| | Sbjct 6085 AGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAATATT 6026 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || |||||| | || || || Sbjct 6025 CAGAAGGAATCTACTTTGCATCTGGT 6000 Score = 111 bits (122), Expect = 4e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||| | |||||||||||||||||| |||||||||| ||||||||| | ||| || Sbjct 4619 TCTAAGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGT 4678 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| |||||||| || || || || | ||||||| Sbjct 4679 ACGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGA 4724 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || ||||| |||||||||||||||||| |||||| ||| | Sbjct 5516 TTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTGATACAAT 5457 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || |||||||| || ||||| ||| || ||| || || || Sbjct 5456 AGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAGAGGCT 5397 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || ||||| || || ||| | ||||||||| | ||| || | || || || | || || Sbjct 5396 GATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAATATTCAAAA 5337 Query 206358 AGAGTCTACTCTTCACCTTGTTTTG 206382 || |||||| | ||| | ||| || Sbjct 5336 GGAATCTACTTTGCACTTAGTTCTG 5312 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||| | ||||||||| ||||||| ||||||||| | ||| || Sbjct 6444 CGTAGACGCAACACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTG 6503 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||| || |||||||||||||| || || | ||||||| Sbjct 6504 CGCCCATCTTCGAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGA 6548 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 204775 AGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 204834 ||||||||| ||||||| ||||||||| | ||| || | ||||||||||| |||||||| Sbjct 5555 AGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCC 5614 Query 204835 GGCGAAGATAAGCCGTTGTTGA 204856 ||||| || || | ||||||| Sbjct 5615 AGCGAAAATCAGTCTTTGTTGA 5636 >seq52194 Length=4646 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| || || |||||||| || ||||||||||| || || ||| Sbjct 4113 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTAGAGCCATCCGAC 4054 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||||||||| || ||||||||| || || || Sbjct 4053 ACCATTGAAAATGTTAAAGCTAA-GATTCAAGATAAGGAAGGAATTCCTCCAGATCAACA 3995 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| || ||||| |||||||||| | || || | || ||||| | Sbjct 3994 ACGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTACAATAT 3935 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||| || |||||| Sbjct 3934 CCAGAAAGAGTCCACCCTTCAC 3913 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||| || || ||||| || || || ||| ||||||| || |||||| Sbjct 4574 CAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGAGCCGTCTGAC 4515 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||||||||| ||||| || ||| || || ||| Sbjct 4514 ACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAACAA 4455 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || ||| ||||||||||| | || || | || |||||| || Sbjct 4454 CGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAACATC 4395 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || |||||||| ||||| Sbjct 4394 CAAAAGGAGTCTACCCTTCA 4375 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| ||||| ||||| || ||||| ||| || ||| Sbjct 3885 CAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTTGAACCCTCAGAC 3826 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| ||||| |||||| || || || Sbjct 3825 ACTATTGAAAATGTTAAAGCCAA-GATCCAAGACAAAGAGGGAATTCCCCCAGATCAACA 3767 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || ||||| || |||||| |||| ||||| | ||| | | || ||||| | Sbjct 3766 ACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAATAT 3707 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||||||||| ||| | ||| | || || Sbjct 3706 TCAGAAAGAGTCCACTTTGCACTTGGTATT 3677 Score = 96.9 bits (106), Expect = 8e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||||| ||| ||||||| || || | ||||||||||| || Sbjct 3913 GTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGTTG 3972 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| || ||||||||||| ||||||||| Sbjct 3973 CTTACCAGCGAAGATAAGACGTTGTTGA 4000 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| || || || ||||| ||||| Sbjct 3645 AAGACTCTTACTGGGAAGACCATCACTTTGGAGGTTGAGCCATCCGACACTATCGAAAAT 3586 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || ||| || ||| || | || ||||| Sbjct 3585 GTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTCATCTTT 3526 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || |||||||| ||||| | ||| || | ||||| ||| |||| ||||| ||| Sbjct 3525 GCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGATTATAACATCCAAAAAGAATCT 3466 Query 206365 AC 206366 || Sbjct 3465 AC 3464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 ||||| |||||||| || |||| || ||||| | || || | ||||||||||||||| Sbjct 4375 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGTCCATCTTCCAGCTGT 4434 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| |||||||| ||||||||| Sbjct 4435 TTGCCGGCAAAGATAAGACGTTGTTGA 4461 >seq58137 Length=8097 Score = 114 bits (126), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || || || ||||| || ||||||||||| ||| Sbjct 7530 AAAATG---CAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 7586 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||| || || | ||| || ||||| ||| |||||||| || ||||| ||| || Sbjct 7587 CCTTCCGATACTATTGAAAATGTAAAAGCCAAA-ATTCAAGACAAGGAAGGCATTCCTCC 7645 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | | || ||||| |||||||| |||||||| ||| | || | | || Sbjct 7646 AGATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGA 7705 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| | || ||||| |||||||||||| | || ||| | ||||| Sbjct 7706 CTACAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCG 7753 >seq133270 Length=334 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || || || ||||||||||| ||||| Sbjct 180 CAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCTGAT 121 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| |||||||| ||||| || || || || || Sbjct 120 ACTATTGAAAATGTAAAAGCTAAA-ATTCAAGACAAAGAGGGCATCCCTCCTGATCAGCA 62 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| ||||| ||||| ||||||||||| | || || | || |||||| | Sbjct 61 GCGTCTTATCTTTGCCGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAACAT 2 Query 206352 C 206352 | Sbjct 1 C 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179489540659239