Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq89413 167 2e-36 seq4562 114 1e-20 seq9095 109 5e-19 seq52194 104 2e-17 seq58137 84.2 2e-11 >seq89413 Length=986 Score = 167 bits (184), Expect = 2e-36 Identities = 204/277 (74%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 59918 TGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTG 59977 |||| ||||| || | || || || || ||||||||||| |||||||| || || || | Sbjct 711 TGGA-AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCG 769 Query 59978 TAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCG 60037 ||||||| | || | |||||||| | || | || ||||| |||||||| || |||| Sbjct 770 TAGATCGTATACCTATACCTAATCTTACTCACTTGCTCTACGGCTTTATTCCAATTTGCG 829 Query 60038 GCGGCGACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGC 60097 |||| ||||| ||||| || ||| | ||| || || |||||| |||| || |||| Sbjct 830 GCGGTGACGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGC 889 Query 60098 GATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCC 60157 | || ||| || || || ||||| ||||| ||||| |||||||||||||| || | | Sbjct 890 GGTCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTAC 949 Query 60158 AGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACC 60194 | ||||| |||||| | | | | |||||||| || Sbjct 950 AAAAACCACAAAAAGGATTGTCTTCATGGAACGAGCC 986 >seq4562 Length=21325 Score = 114 bits (126), Expect = 1e-20 Identities = 668/1046 (64%), Gaps = 39/1046 (4%) Strand=Plus/Minus Query 136972 AGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTA 137031 ||||| || || ||||| || |||| || |||| ||||| | | ||| | ||| Sbjct 20750 AGATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGAT 20691 Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 || || || || || ||||| |||| || | ||| |||||||| | || |||||||| Sbjct 20690 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 20631 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 ||| ||||| | ||||| || ||||| ||| || | | || || || | | Sbjct 20630 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCC 20571 Query 137152 CAGTTCCACAGAT-TGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCG 137210 |||| ||| || | ||| || ||| | | ||||| |||| |||| | | || | Sbjct 20570 CAGTCCCAAAGGTCTGTAGGA----GTTTTGTCCCACATATCATACTGGAGGATACCTTG 20515 Query 137211 ACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATAC 137269 ||||| ||||| || ||| | |||| || | | |||| || | |||| || Sbjct 20514 GCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTT-CTTTTTCAGCTAATTCACAAC 20456 Query 137270 TCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTT 137329 | ||||||| ||||| ||||||||||| | |||| | ||| | | | |||| Sbjct 20455 TAGCTTCTAGTGCACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTT 20396 Query 137330 CTTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGA 137389 | || ||||| | || || | | || |||||||| | || |||| ||| | Sbjct 20395 TCTCACTTTCGTAAGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAA 20336 Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||| |||||||| ||| | | |||||| ||| || | | |||||||| || Sbjct 20335 TACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAA 20276 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 | || |||| | | || | ||| | ||| || | | | | || | | || | Sbjct 20275 CATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAA 20216 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 ||| || || ||| || | | |||| | || | || || || || | ||||| Sbjct 20215 AATTAAATCTGTTA------TTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGC 20162 Query 137570 ATACGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTT 137628 | || ||| ||| | | || | ||||||| |||| || | |||||||||||| | Sbjct 20161 ACACTGCCACTTCATCTTCTGAAG-TGTATTGCACAACCTCTGTGCAAAGATTGCTACAT 20103 Query 137629 CGGATCACTCCCAA-ATTCTTTTGATT-GTTTTTCTCGTTGACGTG-ATCTTTATATATC 137685 || | | |||| ||| |||||||| | ||||| ||| || | ||| ||||| | | Sbjct 20102 TTAAT-AGTGCCAAGATTTTTTTGATTACTCTTTCT-GTT-ACAAGCATCCTTATACAAC 20046 Query 137686 ATATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAATT--TTTCTGTGAAGATCCAACG 137743 || || || || || || || ||||| | || | |||| ||| | | || | Sbjct 20045 ATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCAT--AACTCTTGAG 19988 Query 137744 CCATAATTTGTTCTCTAAA---CTTGCCTTGAGCTTCAAAACTTTCG--TATAGCCGTTT 137798 | | | ||||| | |||| || ||| ||||| | ||| | |||| || Sbjct 19987 CTCTGACTTGTTTTATAAATCGTTTTTCTT---CTTCATA--TTTGGTATATAATTCTTC 19933 Query 137799 AAATTTTTCGCCCATAACAATC-GTTAGACCCGGACACTCGTCGGGACACATCA-ACGAC 137856 ||||| || ||| | || || | || || |||| || | |||||||| | || | Sbjct 19932 AAATTCCTC-TCCAAAGCAGTCAGCGAGGCCAGGACTGTCATGAGGACACATGAGACTCC 19874 Query 137857 CATTTTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGA 137916 | ||| || | || || |||| ||| |||||| || |||||| |||| ||| Sbjct 19873 AAACTTCATCTTTTTCT-ACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAAC 19815 Query 137917 AGGTCGCGAGCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaa 137976 || || | ||| |||| ||||| || | || ||||||||||| || ||| Sbjct 19814 AGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAAT 19755 Query 137977 aTATCAGCATGCCAAGGCTCGATATA 138002 || || |||||||||||||| | ||| Sbjct 19754 ATGTCCGCATGCCAAGGCTCTAAATA 19729 >seq9095 Length=14658 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | || |||||||| ||||| || ||| | ||||| | ||||| ||||| Sbjct 6668 CATCATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGC 6609 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| ||||| | ||||| ||| ||| || || || || || || || || Sbjct 6608 TTCTGATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGA 6549 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGAT 25348 ||| |||||||| |||| || ||| || ||||||||||||| | | ||||| || Sbjct 6548 TCAACAAAGACTGATTTTCGCCGGAAAGCAACTCGAAGATGGGCGCACATTGTCA--GAC 6491 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| || || || || || | || || ||||| Sbjct 6490 TATAATATCCAGAAGGAGTCTACTTTGCACTTGGTGTT 6453 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || ||| | ||||| | ||||| ||||| Sbjct 6208 ATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTCT 6149 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| ||||||||||| || || || ||||| Sbjct 6148 GATACAATTGAAAATGTTAAGGCGAAAATCCAGGATAAAGAGGGCATTCCCCCAGATCAA 6089 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || || || || ||||||| | | | | || |||||| Sbjct 6088 CAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAAT 6029 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || ||||| || | ||| | || || | ||||||| |||| Sbjct 6028 ATTCAGAAGGAATCTACTTTGCATCTGGTACTACGGCTGAGAGGTGGAA 5980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || || ||| | || || | ||||| ||||| Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||| ||| || ||||| || || || || ||||| Sbjct 5008 GACACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCAA 4949 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||||| |||| | || || ||||| ||||||| | | |||||| | || | Sbjct 4948 CAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAG--ACTATA 4891 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||| || || || || || | ||||||||||| | | ||||| |||| Sbjct 4890 ATATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGTCTAAGAGGTGGAA 4840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||| | || || || | ||||| | ||||| || ||| | Sbjct 6436 ATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTAGAAGTTGA-GCCTTC 6378 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| |||||| ||||||||||| || || || ||||| Sbjct 6377 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 6318 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| | || || || || ||||||| | | | |||||||| Sbjct 6317 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAA 6258 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| |||||||| || | || |||| || | ||||||| |||| Sbjct 6257 CATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGAA 6208 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||||| Sbjct 5524 ATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 5465 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || || ||||| || || || || Sbjct 5464 GATACAATAGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 5405 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || |||||||| || ||||||| | | | | || || ||| Sbjct 5404 CAGAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAAT 5345 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || | || ||||| Sbjct 5344 ATTCAAAAGGAATCTACTTTGCACTTAGT 5316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | || || | ||||| | |||| | Sbjct 5296 ATGCAAATTTTTGTAAAAACGCTTACTGGTAAAACTATTACTCTTGAAGTTG-AGCCTTC 5238 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| ||||||| ||||| ||||| || || || || || Sbjct 5237 TGACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 5178 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 || || || |||| || || |||||||| ||||||| | | | ||| || ||| Sbjct 5177 ACAGAGGCTTATTTTCGCTGGAAAACAACTTGAAGATGGACGCACACTATCA--GACTAC 5120 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || ||||| || | |||||||| | | ||||||| || Sbjct 5119 AACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 5070 >seq52194 Length=4646 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||| || Sbjct 3888 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 3829 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| || || || |||||||| || || || ||||| Sbjct 3828 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAA 3769 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||||| || || || |||| | | | | || || |||||| Sbjct 3768 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 3709 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| | || || || ||| | || ||||||| Sbjct 3708 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 3662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| |||| || || | || || | ||||| || ||| | Sbjct 4577 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAAGTAGA-GCCGTC 4519 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | ||||| || ||| |||||||||||||| || || ||||| Sbjct 4518 TGACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCA 4459 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | | ||||||||| || ||||||| | | | || ||||| Sbjct 4458 ACAACGTCTTATCTTTGCCGGCAAACAGCTGGAAGATGGACGTACCTTATCGGACTACAA 4399 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| || || ||| |||||||||| Sbjct 4398 CATCCAAAAGGAGTCTACCCTTCATTTAGT 4369 >seq58137 Length=8097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| |||||| | || || ||| | || || | ||||| ||| | Sbjct 7529 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 7588 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||||||| || | |||||| |||||| || || || || || || || || Sbjct 7589 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 7648 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | |||| || || || ||| | ||||| | | | | || || Sbjct 7649 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACTA 7708 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||||||| || |||| || || || Sbjct 7709 CAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444237821390880