Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4562 605 4e-168 seq7375 91.5 2e-13 seq7176 86.0 9e-12 >seq4562 Length=21325 Score = 605 bits (670), Expect = 4e-168 Identities = 1122/1629 (69%), Gaps = 23/1629 (1%) Strand=Plus/Minus Query 68354 TTATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGAT 68413 |||||||| | || || | ||||||||||| | | ||| |||||||| |||| | Sbjct 21100 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 21041 Query 68414 AGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGG 68473 ||||||| || ||||| | ||| | |||| ||| |||||| || || ||||| Sbjct 21040 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 20981 Query 68474 AATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTC 68533 ||| | || | || | ||| || || | ||||||||||| || || |||||||||| Sbjct 20980 CATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTC 20921 Query 68534 TATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAAT 68591 |||| || ||||| | ||| | || | | ||| ||||| | || | || |||| Sbjct 20920 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 20861 Query 68592 CTGTTTGATATCATCTGGAAGGCT---CGTATTTTGAATGGATCCACCATCGGATATAAT 68648 || || || || | |||| | | | ||| || |||||| | | ||||||| Sbjct 20860 CTCTT--ATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAAT 20803 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | || || || || |||| |||||| | | || ||| | | || ||||| | Sbjct 20802 AAGGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 20743 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 || |||| ||||||| |||||||| ||||| | ||||||||| ||| | || Sbjct 20742 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 20683 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | ||||||| | || || |||||||| ||||| || ||||| |||||||| || | Sbjct 20682 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 20623 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | | ||||||| || || || ||||| || ||| ||||| Sbjct 20622 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 20563 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 ||| || | || | ||| | ||| || || || || || | ||||| | Sbjct 20562 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGAC 20504 Query 68949 TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 ||| || |||||| || | ||||| | |||||||| ||||||||| || |||| || Sbjct 20503 TCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAGTG 20444 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 |||| |||||||| ||||| || || | | ||||||| | ||||| ||| ||| Sbjct 20443 CACCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGT 20384 Query 69068 ATGGATAATGT-AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 | |||| | | | | | ||| |||||||||| |||||||| |||||||| |||||| Sbjct 20383 A-AGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 20325 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 ||||||||| |||||||| ||| ||||| || | ||||||| |||||| ||| |||| | Sbjct 20324 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 20265 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 || || | |||| | ||| | || | || |||| ||| ||||| ||||| Sbjct 20264 TTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG 20205 Query 69247 CCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA--T 69304 || | ||||||||| || ||||||| || || || || || ||||| || ||| | Sbjct 20204 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCT 20145 Query 69305 TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 | | || ||||| | | |||||| || ||||| |||||||| ||||| || |||| Sbjct 20144 TCTGAAGTG--TATTGCACAACCTCTGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 20087 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 ||| |||||||||||| ||||||| || ||||| || | || | || |||||||| | Sbjct 20086 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 20027 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTAC-GGTCTTGTAA 69483 | | || | ||| ||||| || ||||| | || || | | | | || || || ||| Sbjct 20026 CCACTTGGGCTTCTATAATTGACTTCCATA--ACTCTTG-AGCTCTGACTTGTTTTATAA 19970 Query 69484 --CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCA 69540 || || |||| |||||||| ||||||| ||| ||||| ||| || || || ||| Sbjct 19969 ATCGTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCT-CCAAAGCAGTCA 19911 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | ||||||| |||| |||||||| | ||| || ||||| | | |||| | Sbjct 19910 GCGAGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTTTTTCTACTCTT 19851 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 |||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||||||| Sbjct 19850 TTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCC 19791 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || || || | ||| | || || | || || | |||||| || |||| | Sbjct 19790 TTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGGCTCTAAA 19731 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || || ||||| ||||| || ||||||| ||||||||||| || Sbjct 19730 TAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTG 19671 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| ||||||| ||| || | | |||||| || ||||| || |||| || ||| Sbjct 19670 TTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAA 19611 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || || | || | || || |||||| || || || |||||| ||| Sbjct 19610 GAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATT 19551 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| |||| || || ||| | ||||| || |||||||| ||| |||| | | Sbjct 19550 AATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATA 19491 Query 69961 AGAAAACAG 69969 || |||||| Sbjct 19490 AGGAAACAG 19482 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||| ||||||| |||||| |||||| |||||| || ||||||||||||||| Sbjct 18969 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 18910 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||| || |||| ||| |||| | || ||| ||||| | ||| Sbjct 18909 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 18860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70345 TTTTTTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || || || || || |||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 18225 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 18166 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | ||| || ||||||||| ||||| ||||||| |||| | || |||| Sbjct 18165 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 18106 Query 70465 GTAACTCCGTtatata 70480 || || || ||||| Sbjct 18105 GTTACACCAGAATATA 18090 >seq7375 Length=9560 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||| || ||||||||||| || || || ||||| ||||| | | Sbjct 3667 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3608 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||||||| ||||||| ||||| || ||||| || Sbjct 3607 CATATATCTGGATATTGGATTGGGAATATAACGAA 3573 >seq7176 Length=6331 Score = 86.0 bits (94), Expect = 9e-12 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 162494 TTATGACCCC--TATTAATCCTATGCTAGCAGAATCATGCGATTCCGTTAACAAGGCATT 162551 ||||||| || ||||| || ||| |||| ||| | ||| | || ||| | | ||| | Sbjct 2579 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2636 Query 162552 TAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAGTGCAAGT 162611 ||||||| |||| ||| |||||| | || | ||||||||||| ||||| || ||||| Sbjct 2637 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2696 Query 162612 TCATAAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTTTACAACA 162671 |||||||| || |||| | ||| | | | ||||| || | || Sbjct 2697 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2756 Query 162672 CAAAGTTGATTATCTAAAAGAATACCTTCCCATAGCA-TTCAAAAAAGCTACATCTATTA 162730 ||||||| | || | ||||| || | |||| |||| ||| ||| | | || | | Sbjct 2757 CAAAGTTAGTCATTTTAAAGATTATTTGCCCAAAGCATTTCCTAAAGGAGATGACT-TGA 2815 Query 162731 TCTTGGATTCTGAAATTGTTCTAGTCGACGAACATAATG---TACCACTTCCGTTTGGAA 162787 |||||||| ||||| | || | || || | ||| || |||| | || || || | Sbjct 2816 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 2875 Query 162788 GTTTAGGAATACATAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTGTTTG 162847 ||||| || || ||| | ||||| |||| | || | | || || | | |||| Sbjct 2876 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 2935 Query 162848 ATTGTTTATA 162857 |||| ||||| Sbjct 2936 ATTGCTTATA 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685586852600760