Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7375 93.3 3e-14 seq10593 91.5 1e-13 seq13339 84.2 2e-11 >seq7375 Length=9560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||||||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 3813 GACTTAGCAGATTGGGAGACATTAAAAGATTGTGAGAAACATTTTATCAAGCAT--GTCT 3870 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || || | | Sbjct 3871 TAGCATTCTTTGCAGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCAC 3930 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 3931 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 3990 Query 43974 TTCATTCGGAAATGTAC 43990 ||||||| || |||||| Sbjct 3991 TTCATTCAGAGATGTAC 4007 >seq10593 Length=35691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | ||||| ||| || || Sbjct 20382 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGTGTTAAGCCCTC 20441 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCG- 115148 | ||| |||||||| || | || ||| ||| |||||||| |||||||||||| || Sbjct 20442 GCATGTAAACGGCATATC-TTCTTGTCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 20500 Query 115149 GTAAACGATGCAAATTTATCACCAAT 115174 || | || ||||| ||||| ||||| Sbjct 20501 GTCGA-GAAGCAAACTTATCTCCAAT 20525 >seq13339 Length=12762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||||||||||||||| |||| || | |||||||| ||| || |||| |||| Sbjct 132 CCCAAAATTGTAAATGGTCCACAAATTTTGGACAAATATGTCGGTGAAAGTGAAGCAAAT 73 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 | | | ||||||||||| || ||||||||| | ||||| Sbjct 72 ATTAGGAGATTGTTTGCTGATGCCGAAGAAGAAGAGAAACG 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396710223373795