Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq58137 111 1e-19 seq9095 105 5e-18 seq21475 82.4 5e-11 >seq58137 Length=8097 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| ||||| || ||| ||||| | || || ||| Sbjct 7530 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 7589 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 7590 TCCGATACTATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAG 7647 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || ||||| || ||||| |||||||| |||| ||||| | | || || | Sbjct 7648 ATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACCCTTTCTGACT 7707 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||||| ||| | || ||||| |||||| | ||||| || Sbjct 7708 ACAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 7759 >seq9095 Length=14658 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || ||||| ||| |||||| | || || ||| | Sbjct 5068 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5009 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||| || ||||||||||| |||| | Sbjct 5008 GAC-----ACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTG 4954 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | | |||||||| ||||| ||| |||| || | |||| ||||| || | Sbjct 4953 ATCAACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACT 4894 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || ||||| || ||| ||||||||||| || |||||| Sbjct 4893 ATAATATCCAGAAGGAGTCTACTTTGCATTTAGTGTTGCGT 4853 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || ||||| ||| |||||| | || || ||| | Sbjct 5752 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 5693 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||| || ||||||||||| |||| | Sbjct 5692 GAC-----ACAATCGAAAATGTTAAAGCAAAGATTCAGGACAAAGAAGGCATTCCTCCTG 5638 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | | ||||| || ||||| ||| |||| || | |||| ||||| || | Sbjct 5637 ATCAACAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACT 5578 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || ||||| || ||| ||||||||||| || |||||| Sbjct 5577 ATAATATCCAGAAGGAGTCTACTTTGCATTTAGTCTTGCGT 5537 >seq21475 Length=13715 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || ||||| || ||| ||||| | || || || | | Sbjct 10895 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 10954 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | || || || ||| ||||| || || |||||| |||| || || Sbjct 10955 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 11014 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || |||||| | || || | ||| | ||||| || ||||| Sbjct 11015 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 11074 Query 27969 CATCCAAAAAGAGAGCACTTTGCAT 27993 ||| ||||| || ||| |||||| Sbjct 11075 CATTCAAAAGGAATCCACATTGCAT 11099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355194668577993