Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2
02015-12-17] 153,959 sequences; 293,608,641 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9095 172 1e-37
seq21475 138 3e-27
seq52194 136 9e-27
seq58137 122 2e-22
seq23 122 2e-22
seq133270 98.7 2e-15
seq92866 86.0 1e-11
>seq9095
Length=14658
Score = 172 bits (190), Expect = 1e-37
Identities = 170/220 (77%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
|||||| || |||||||| ||||| |||||||| |||| ||| || || | ||| || |
Sbjct 4622 AAGTCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGGATATTATAGTCTGACAATGTACG 4681
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||||||| || ||||| ||||| || || |||| |||||| || || |||||||||||
Sbjct 4682 CCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGAATACCTTC 4741
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||||||||| || || ||| ||| ||| || || || || | |||||| || || ||
Sbjct 4742 CTTGTCTTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGT 4801
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| || || || |||| || |||| ||| | |||||||
Sbjct 4802 GATAGTTTTCCCAGTCAGTGTCTTTACGAAAATTTGCATT 4841
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| | ||| || || || |||| ||| || || | ||| || | ||||||||| || ||
Sbjct 6461 GTGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCGAGTTG 6520
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||| || ||||| || |||| |||||| || || ||||| |||||||||||||| |||||
Sbjct 6521 CTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 6580
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
| ||| || |||||| || || || | |||||| || || ||||| || || || ||
Sbjct 6581 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 6640
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
|||||||||| ||| | ||||||
Sbjct 6641 TAAAGTTTTTACGAAGATTTGCAT 6664
Score = 143 bits (158), Expect = 6e-29
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| | ||| ||||| ||||| | ||| || || | || ||| | |||||
Sbjct 5312 CAGAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAGTCAGACAGAGTGCGTCCATC 5371
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||||||||| || |||||||| || || | |||||||| || |||||||||||||||||
Sbjct 5372 TTCTAGCTGTTTGCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTGTC 5431
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||| || || ||| ||| ||| || || || || | |||||| || || ||||| ||
Sbjct 5432 TTGAATTTTAGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGT 5491
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || |||| || |||| || | |||||||
Sbjct 5492 TTTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 5525
Score = 131 bits (144), Expect = 4e-25
Identities = 159/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| | ||| |||||||| || | |||||||| | | || | ||||||
Sbjct 6225 AGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCT 6284
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| ||||| || ||||||| ||| || || || ||||| || || || ||
Sbjct 6285 TCTAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCC 6344
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| || ||| || || ||| ||| || || || || | || || ||||| ||||| ||
Sbjct 6345 TGAAT-TTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCTAAAGTGATAGT 6403
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||||| |||| || |||| ||| | |||||||
Sbjct 6404 CTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 6437
>seq21475
Length=13715
Score = 138 bits (152), Expect = 3e-27
Identities = 166/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| || ||||| || | |||||||| ||||| | ||||| || | ||| ||
Sbjct 11116 CGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTA 11057
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||||||||| || || ||||| ||||| | ||||| ||||| || |||||||||
Sbjct 11056 CGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCT 10997
Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| |||||||| ||| || || ||| ||| || || || |||| ||||| || |
Sbjct 10996 TCCTTATCTTGGAT-TTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCCACCTCGAG 10938
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || || ||||| | || || | ||| | |||||||
Sbjct 10937 GGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 10895
>seq52194
Length=4646
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| ||||| |||| |||||| || | || || | ||||||
Sbjct 3905 AGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 3964
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||||||||| |||||||| || || ||||| |||||||| |||
Sbjct 3965 TCCAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 4024
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| || ||| ||| |||||||| || | || || || || || || ||
Sbjct 4025 TGAATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCTACTTCCAAAGTTATTGTT 4084
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || | ||||| | || | |||||||
Sbjct 4085 TTTCCAGTAAGTGTTTTGACAAATATTTGCATT 4117
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||||| || ||||| | || ||| | ||||| || | ||| || |||
Sbjct 3464 GTAGATTCTTTTTGGATGTTATAATCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCA 3523
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|| ||||| || || |||||||| || ||||| || ||||||||||||||||| |||
Sbjct 3524 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTA 3583
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| |||||| ||||| || | || || || || ||||| ||||| || || | |||
Sbjct 3584 ACATTTTCGATAGTGTCGGATGGCTCAACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTC 3643
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 3644 TTAACGAAGATCTGCAT 3660
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| | |||||| ||||| || | |||||| || | | ||| | ||||| || |||||
Sbjct 3685 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCCTCCAGCTG 3744
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||| |||||||| || || |||||||| || || ||||| || || ||||||||||||||
Sbjct 3745 CTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTT 3804
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||| ||| || |||||||||| ||| || ||||| ||||| || || || ||
Sbjct 3805 GGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGT 3864
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
| || |||| || | |||||
Sbjct 3865 GAGTGTCTTTACAAAGATCTGCAT 3888
>seq58137
Length=8097
Score = 122 bits (134), Expect = 2e-22
Identities = 164/226 (73%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| ||||| ||||||||||| | |||||| || | | ||
Sbjct 7754 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGGGT 7695
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| | ||||| |||||||| || | |||||||| || || ||||| ||
Sbjct 7694 GCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCC 7635
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
|||||||||||| || ||| || || ||| ||| || || || || | ||| || || |
Sbjct 7634 TTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCA 7576
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
| || || || || ||||| | ||||| | || | ||||||||
Sbjct 7575 AAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530
>seq23
Length=15353
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || |||| |||| || ||||| ||| |||| ||||| ||| | ||||||
Sbjct 11344 CAAATTTATAATACTATTGTTACAGCTCATGCTTTTATTATAATTTTTTTTATAGTTATG 11403
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || ||||||||||| || || ||||| | || |||||||||
Sbjct 11404 CCAATTATAATTGGAGGATTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTGAT 11463
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731
|| |||||||| | | || || ||||| |||||| | |||| || || ||| || ||
Sbjct 11464 ATAGCTTTTCCTCGAATAAATAACATAAGATTTTGACTTTTACCCCCATCATTAATTTTA 11523
Score = 118 bits (130), Expect = 3e-21
Identities = 88/103 (85%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||||||||||||||||||||| |||||||||||||| | |||||||| ||||| |
Sbjct 11920 ATACTTCAGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCACCTCCTC 11861
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| ||| |||||||| ||||| ||||||| |||||||||
Sbjct 11860 CTGCTGGGTCAAAAAAAGATGTATTTAAATTTCGATCAGTTAA 11818
>seq133270
Length=334
Score = 98.7 bits (108), Expect = 2e-15
Identities = 103/134 (77%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| | ||| ||||||||||||| ||||| || | | || | ||||||
Sbjct 200 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGATAGTGTACGACCATCT 259
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|||| ||||| || || || ||||| |||||||| || || ||||| ||||| ||||||
Sbjct 260 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 319
Query 225622 TGGATCTTTTGCTT 225635
||||| ||| ||||
Sbjct 320 TGGAT-TTTAGCTT 332
>seq92866
Length=653
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424
|||| ||||||||| | || ||| ||| |||||||||| ||||| || || ||||||
Sbjct 141 AATGCTAATTTATGTAATCTTATACCTGGTGCTCTCATATTTAATATTGTTGTTATAAAG 200
Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484
|| || || || || | | | |||||||| | ||||||| ||||||||||||||
Sbjct 201 TTCATGGCTCCAAGTAAACTACTTATACCTGATAAATGTAAAGCGAATATTGCTAAATCA 260
Query 371485 AC 371486
||
Sbjct 261 AC 262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1190178813327546
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