Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4562 592 2e-164 seq7375 100 4e-16 seq7176 95.1 2e-14 >seq4562 Length=21325 Score = 592 bits (656), Expect = 2e-164 Identities = 1037/1497 (69%), Gaps = 17/1497 (1%) Strand=Plus/Minus Query 76762 TTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGAT 76821 |||||||| || || | ||||||||||| | | | ||| |||||||| |||| | Sbjct 21100 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 21041 Query 76822 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGG 76881 ||||||| || ||||||| ||||| |||| ||| |||||| || || ||||| Sbjct 21040 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 20981 Query 76882 AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 76941 ||| |||| | || | ||| || || | || |||||||| || || |||||||||| Sbjct 20980 CATAGTTAGGTTTAGCAACATGGATGTTGAAAGATTGACTTTGGTCTATAAAAGCTCCTC 20921 Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001 ||||||| ||||| | ||| || || | | ||| ||||| | |||||| | | | Sbjct 20920 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 20861 Query 77002 GTTTGATATCATCTGGAAGGTTTGTATTTT---GAATGGAACCACCATCTGATATAATTG 77058 | | || || | |||| ||| | ||| | || || ||| | ||||||| Sbjct 20860 CTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAA 20801 Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 || || ||||| |||| |||||| | | || ||| | | || |||||| | | Sbjct 20800 GGTTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 20741 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | |||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 20740 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTT 20681 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||||| |||| || | |||||| |||||||| ||||| |||||||| || | || Sbjct 20680 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCA 20621 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 ||| | ||| | | ||||||| || || || ||||| || ||| ||||||| Sbjct 20620 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAA 20561 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 | |||| ||| ||||| | ||| || || || || || | || || | || Sbjct 20560 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGACTC 20502 Query 77359 CATT-ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || |||||| || | |||||| ||||||||| ||||||||| ||||| | ||| Sbjct 20501 CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAGTGCA 20442 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 || |||||||| ||||| || || | | ||||||| | ||||| ||| || | Sbjct 20441 CCATAATAAATAGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAA 20382 Query 77478 GGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 | ||| | | | | | ||| |||||||| | |||||||| ||||||||||||||||| Sbjct 20381 G-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCT 20323 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 ||||||| |||| ||| |||| ||||| || | ||||||| |||||| || |||| ||| Sbjct 20322 ATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTTT 20263 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | |||| | || | || | || |||| ||| ||||| |||||| Sbjct 20262 GTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTT 20203 Query 77657 ATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 || | |||||||||||| | ||||| || || || || || ||||| || |||| | Sbjct 20202 ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTC 20143 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | ||||| | | ||| || || ||||| |||||||| |||||||| ||||||| Sbjct 20142 TGAAGTGTATTGCACAACCTCTGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTT 20083 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| || |||||| | || || | |||||||| | || | || || || || || | Sbjct 20082 TTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCAC 20023 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATCATAGATTTGTA--TC 77892 || | ||| ||||| || ||||| | ||||| |||| | | | | ||| || || Sbjct 20022 TTGGGCTTCTATAATTGACTTCCATA--ACTCTTGAGCTCTGAC--TTGTTTTATAAATC 19967 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA-TCATCC 77951 | | ||| |||||||| ||||||| ||||||||| ||||| || || ||| | Sbjct 19966 GTTTTTCTTCTTCATATTTGGTATATAATTCTTCAAATTCCTCTCCA-AAGCAGTCAGCG 19908 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | ||||| | |||| || ||||| | ||| | |||||| | |||| |||| Sbjct 19907 AGGCCAGGACTGTCATGAGGACACATGAGACTCCAAACTTCATCTTTTTCTACTCTTTTC 19848 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 ||||| ||||| |||||||||| |||| ||| || |||| | ||| |||||| || Sbjct 19847 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 19788 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 ||||| ||||| || | ||| | || || | || || | |||||| || |||| ||| Sbjct 19787 CCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGGCTCTAAATAA 19728 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 ||||| | | || || ||||| || || || ||||||| ||||||||| || || ||| Sbjct 19727 ATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTA 19668 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || |||||||||||||| | | ||| || || ||||| || |||| || ||| Sbjct 19667 TACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAA 19611 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 18970 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 18911 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||| ||||| || |||| ||| |||| | || ||| || |||| ||| Sbjct 18910 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 18860 >seq7375 Length=9560 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||||||||||| || |||||||| ||||| || |||||||||||||| | | Sbjct 3667 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3608 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||||| |||||||||||||| ||||| || Sbjct 3607 CATATATCTGGATATTGGATTGGGAATATAACGAA 3573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| ||| ||| | ||| || || || | |||||||| || || |||||||| Sbjct 4857 TCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTC 4798 Query 48225 AGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||||||||||| || |||| | || || || ||||| || || || || ||||| || Sbjct 4797 AACCAAAATATTGAAGC-AAAGCTGCCTGAGAAAAATATTCCCTCAACCGCTGCAAAAGC 4739 Query 48284 GGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339 | | | ||||| ||| | | ||| | || |||||| || ||||| || | Sbjct 4738 AATTATACGTTCTCCAAATGTAGCCGTCTT-GCTGCCGATCCACTGTAACGCCCAGTCTG 4680 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||||||||| ||||| || | ||||| || ||||| || Sbjct 4679 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAA 4640 >seq7176 Length=6331 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 170967 TTATGATTCCTATAAATCCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTA 171026 |||||| ||| || || |||||||| ||| | || | || ||| | | ||| | | Sbjct 2579 TTATGACTCCAGTATTACCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 2638 Query 171027 AAAAATTTCCATCTGGAATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTC 171086 |||||| |||| ||| |||||| | || ||||||||||||| ||||| || ||||| | Sbjct 2639 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2698 Query 171087 ATAAAAACAATAATAATTTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATA 171146 ||||||| ||| | || | ||| | | | | |||||||| | | || | Sbjct 2699 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2758 Query 171147 AAGTTGATTATCTCAAGGAATACCTTCCTAAAGCATT---TAAAAAAGCTACCTCTATTA 171203 ||||| | || | || || || | || |||||||| |||| || | || | | Sbjct 2759 AAGTTAGTCATTTTAAAGATTATTTGCCCAAAGCATTTCCTAAAGGAGATGACT---TGA 2815 Query 171204 TCTTGGATTCCGAAATTGTTCTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAA 171260 |||||||| | ||| | || | ||||||| ||| || ||| | || || || | Sbjct 2816 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 2875 Query 171261 GTCTAGGAATACACAAAAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTG 171320 |||| || |||||| | ||| | ||| ||||| | | || || | | |||| Sbjct 2876 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 2935 Query 171321 ATTGTTTATA 171330 |||| ||||| Sbjct 2936 ATTGCTTATA 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693331918577760