Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pardalinus_20sergestus_20[genbank_20GCA_5F001486225.1_2 02015-12-17] 153,959 sequences; 293,608,641 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq52194 107 2e-18 seq9095 105 6e-18 seq58137 95.1 1e-14 seq21475 89.7 5e-13 >seq52194 Length=4646 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| |||||| |||| |||| ||| ||| |||||||| || ||||| ||| Sbjct 3662 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 3721 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| || || || ||||| || | |||| Sbjct 3722 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 3781 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | |||||| | || || Sbjct 3782 ATTCCCTCTTTGT-CTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAAC 3840 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || |||||||| || |||||||| Sbjct 3841 TTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 3888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || | ||||| || || || || |||||||| || || Sbjct 3434 CCACCGCGAAGACGAAGTACTAAATGCAAGGTAGATTCTTTTTGGATGTTATAATCCGAC 3493 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||| || || || || || || ||||||||||| | |||| Sbjct 3494 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 3553 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | ||||||| | ||| || Sbjct 3554 ATGCCCTCCTTGT-CTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCAAC 3612 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 3613 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACGAAGATCTGCAT 3660 >seq9095 Length=14658 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| || || ||||| | || || || || || || ||||| Sbjct 5106 TCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCGAAA 5165 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | ||||||||| | ||||| | |||||| | | ||| ||||||||| ||| Sbjct 5166 ATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTAT-CTTGAATTTTTGCTTTAACATT 5224 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| || || | || || |||||||| || ||||| ||||| Sbjct 5225 TTCAATTGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGCGTTTTTAC 5284 Query 41851 GAAAATCTGCAT 41862 ||||| ||||| Sbjct 5285 AAAAATTTGCAT 5296 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||| || ||||| || || ||||| | || || |||||||| || || || Sbjct 5790 TCCTTCTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAA 5849 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | |||||||| | |||| | ||||| | | ||| |||| || | ||| Sbjct 5850 ATAAGCCTTTGTTGGTCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTGGCCTTAACATT 5908 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| || |||| || || ||||| || ||||| |||||||| Sbjct 5909 TTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTTTGCCAGTCAGTGTCTTTAC 5968 Query 41851 GAAAATCTGCAT 41862 || || ||||| Sbjct 5969 AAATATTTGCAT 5980 >seq58137 Length=8097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || || || ||||| || ||||| || Sbjct 7759 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 7700 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || | ||||| || ||||| |||| || ||||| || | ||| Sbjct 7699 AGGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7640 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| |||| |||| || || ||| ||| | || || Sbjct 7639 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 7581 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || ||||||||||| || || || || || |||||||| || Sbjct 7580 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 7530 >seq21475 Length=13715 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| ||||||| ||| ||||| |||||||| ||||| || Sbjct 11122 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 11063 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || || || || || || || |||| || || ||||| | ||| Sbjct 11062 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 11003 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || |||||| |||| || | | ||| || | |||||| Sbjct 11002 ATACCTTCCTTATCTTGGATTTTA-GCTTTTACATTTTCTATAGTATCAGAGGCCTCCAC 10944 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 10943 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 10896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461414301730800