Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq227148 527 7e-145 seq36366 127 2e-24 seq242670 102 1e-16 seq187312 95.1 1e-14 seq352311 91.5 2e-13 >seq227148 Length=2115 Score = 527 bits (584), Expect = 7e-145 Identities = 1206/1798 (67%), Gaps = 43/1798 (2%) Strand=Plus/Minus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| | || || | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||| ||||||| ||| | |||| ||| ||||| ||| |||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 || | || | || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 53029 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCT 53085 |||| | |||| |||| |||| ||| || ||||||||| | || || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 ||| || || || |||| |||||| | | || ||| | | || || || | || Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 53266 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325 | | ||| | | ||||| | ||| || || ||||| || | |||| | |||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 53326 ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATC 53384 || | || ||||| ||||| | || || | || | Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATCATACTGTAGGATACCTTGGCTTGCTGGAC-TCC 1239 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || |||||| ||||| ||||| || || |||| ||||||||| || |||||||||| Sbjct 1238 CTTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 1179 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 | |||||||| ||||| || || | | ||| |||| | ||||| || || | | Sbjct 1178 CATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCACTTTCGTAAG 1119 Query 53505 GATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 | || | | | | | |||||| ||||| | || |||||||||||||| |||||||| Sbjct 1118 G-TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTG 1060 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 |||||| |||| || ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1059 TGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTG 1000 Query 53624 TTGAGGTTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 || | ||| | ||||| ||||| | || || | || ||||| |||| Sbjct 999 TTTAAATTTTGAGTTACAAT--CTTTG-TGATTTCTTTTAACTTTTTAAAATTAAATCTC 943 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 || | ||||||||||| | ||| || || || || |||||||| || || || | Sbjct 942 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCACTTCTT-- 885 Query 53741 GCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | | ||||| | | ||||||||||||||| ||||| || || || || | | Sbjct 884 -CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGTGCCAAGA 826 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 |||| |||||||||||| ||||||| ||||||||||| | ||| |||| |||||||| Sbjct 825 TTTTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGTACCAGTC 766 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC-----CTT-TATTATAGAT 53911 || | |||| ||||||||| | ||||| | | |||| ||| | ||||| Sbjct 765 TCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTTTATA--- 709 Query 53912 TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACA 53971 ||| ||||| ||| ||| ||||| | | ||| || || ||||| || Sbjct 708 ---AATCGTGTTTCTTCTTCATATTTGGTATATAGTTCTTCGAATTCCTCTCCATAACAG 652 Query 53972 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 54031 | | | || ||||| |||| |||||||| | ||| | | |||| | ||| Sbjct 651 TCAGCGAGGCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCATTTTCTACT 592 Query 54032 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 54091 | ||||||||| |||||||||||||| | ||| ||| || ||||| | ||| ||| Sbjct 591 CTTTTCATAAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCT 532 Query 54092 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 || || ||||||||||| || | ||| | |||| | | || || | |||||| || || Sbjct 531 TCCTTACCTGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCT 472 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 || || || | | | ||||| ||||||||||| || ||||||| ||||| || || Sbjct 471 AAATAAATTGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATCTGGCAGTA 412 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 || ||||| |||||||||||||| | | |||||| || | ||||| || || | || Sbjct 411 TTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGCCAGCTATG 352 Query 54272 TAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCATTTT 54327 || || ||| || | || || || || || |||||| || || || ||| Sbjct 351 TAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATTT 296 Query 54328 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 54387 ||| |||||||| || ||||||| |||||| | || || || || ||||| || |||| Sbjct 295 AGAAATTAATGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 236 Query 54388 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 54447 | || || || || | || | || || | || || | ||||| Sbjct 235 AGCTATAAGGAAGCAAGAGGAAAGCTGTGGCCGTGGTGTAGCTGCTGAGAACAGTGTAGG 176 Query 54448 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTAT 54507 ||||| ||||| |||| || || | | ||| || || | ||| || || || Sbjct 175 GCTTGCGTGTGTAAAATATTTCTCCGACATCATATTATAAGTATTGATTGCACTATCAAT 116 Query 54508 ATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 || || | ||||| |||| || ||| | ||| | |||||| |||||||||||||| Sbjct 115 GTCTTCACCG-TGAATACCTATTGAGACTCTCATAAGCATGTGTTGAGGTCTTTCAAC 59 >seq36366 Length=4232 Score = 127 bits (140), Expect = 2e-24 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||| ||| | ||| ||| || || | ||||||||| || ||||| |||| Sbjct 2356 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCACGTTTTT 2415 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||||||||| || ||||| || || || || |||||||| ||||||||||| | Sbjct 2416 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCTTCAACTGCCGCAAAAG 2475 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 24331 |||||| | |||||| || | || ||| || ||||||| | ||||| || Sbjct 2476 CAATAATACGTTCTCC--AAATGTAGCAGTCTTGCTGCCGATCCACTGTAATGCCCAGTC 2533 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||||||| |||||||| || | ||||| || |||||||| Sbjct 2534 TGCCTTCTTCTTTACACACGGTAGAGTCTCAATTGCATTAAA 2575 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| || ||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| ||||||| ||||| || ||||| || | ||||||| Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAAACGTCTTGGATT 3713 >seq242670 Length=698 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||| ||| |||| ||| || ||| ||||||||||||||||||||||||||||||| Sbjct 390 CTTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 449 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||||| ||| Sbjct 450 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq187312 Length=1851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 244/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506 |||||||| || ||||| | |||| | | | | ||||||||| | || | Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 147566 ||||| | || | ||||| || |||| ||||||||| |||| | | | Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 147567 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAG 147623 |||||| ||||| | || | || || | ||| || | | | | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 147624 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGA 147683 |||||||| |||||| | ||||| |||| | || | | ||||| | | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 147684 CTGTTTGTA 147692 || ||||| Sbjct 1395 TTGCTTGTA 1403 >seq352311 Length=307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || |||||||||| ||| |||| || ||||| || || | |||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||| ||||| || | ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589029893172480