Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19446 210 2e-49 seq14063 194 1e-44 seq26980 109 5e-19 seq422991 104 2e-17 seq78338 100 2e-16 seq78339 98.7 8e-16 >seq19446 Length=4212 Score = 210 bits (232), Expect = 2e-49 Identities = 489/725 (67%), Gaps = 13/725 (2%) Strand=Plus/Minus Query 102322 GTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTG 102381 ||| ||||| || ||||| || || |||||||| | ||| || | ||| | | |||| Sbjct 2365 GTTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTG 2306 Query 102382 AGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAG 102441 |||| | |||| | || || ||||| || | || | ||||| || || | Sbjct 2305 AGCCTTGCCGTAGTCAACGACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAA 2246 Query 102442 CTCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCA 102500 ||||| |||| | || ||||| ||||| || ||||| | || || ||||||| Sbjct 2245 TTCGTATTTCTTAC-CATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCA 2187 Query 102501 GCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCT 102560 |||| | || || | || || | | | ||||| | ||||| || || | Sbjct 2186 TCAAACTTACATAGCAATCACCATCTT-CTGGGC--TACCGAGATCAGGGTTAGCACCTT 2130 Query 102561 TGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAA 102620 |||| || || |||||||||||||| || || || ||||| || ||||| | | | Sbjct 2129 TGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGGA 2070 Query 102621 ACTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAAC 102679 |||| || || || | ||||| || | | ||| ||| | || |||| Sbjct 2069 ACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACAAAAAAGAAGAAA 2011 Query 102680 GGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGC 102739 || || | |||||||| || ||||| || || || || || || | ||| || | Sbjct 2010 GGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTTAATTCAGGGCGAGCTTGT 1951 Query 102740 TTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCC 102799 || | ||| || |||||||||||||||||||||||||||||||||| || | || Sbjct 1950 TTTAATGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCT 1891 Query 102800 TTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGG 102859 ||||| || ||||||| || ||||| || |||||||| | ||| || ||||| | ||| Sbjct 1890 TTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGG 1831 Query 102860 CCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAAT-GGTCTTGAGCGCGTCGTT 102918 || |||| || |||||||| |||| ||||||||| ||| | || ||| ||| || Sbjct 1830 CCGCTGCAGGACCGCTGCAGTGCTTGAAAACTGCCTTCAATCTCTTTTAAGC-TGTCATT 1772 Query 102919 TAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAG 102978 | ||||| ||||||||||| || || |||||||| |||| ||| | || || || | Sbjct 1771 GATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTAT 1712 Query 102979 CGGCACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGCG 103036 || | ||||| || || || || || |||||||| |||||||| || || Sbjct 1711 AGGTATGCGATCCACGGGGAATTTCCTAGG--ATAGACGCCCCATTCTACGAAGTAGGCA 1654 Query 103037 GCCAC 103041 |||| Sbjct 1653 CCCAC 1649 >seq14063 Length=7913 Score = 194 bits (214), Expect = 1e-44 Identities = 209/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 29024 CACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCG 29083 |||||||| || |||||| ||| || | || || |||||||| || ||||||| || Sbjct 7183 CACGCCTCCGTGATCACCTTCTGGACGTACTCTCGACCCTTGACCAGTTGCACGTAAGCG 7124 Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || |||||| ||||||| ||||| |||| ||||||| ||||||| ||||| ||||| Sbjct 7123 CACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCATTCTCCCAGTCCTTG 7064 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || |||||||| ||| | |||||| || ||||| |||||||| |||||||||||||| Sbjct 7063 AGGCCGCCGTCACAGTAGAAGCACTTTGTTTTGTCACCCTGGCCGGTGTAAAAGAATCCC 7004 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 || ||||| | || ||||| |||||||| | ||| ||||| || |||| |||| Sbjct 7003 GCTTCGGCGAGTTCCTCGGGTTTCTGTTTCATACTGCGTGGCCAGTCGCTGAAGGAGCGC 6944 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300 | || || || || | ||| || ||| |||| ||| Sbjct 6943 AGGCGGGCCGCCTCGGAGGCGTAGCGCGCGTGCACGG 6907 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29354 CGCACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTT 29413 |||| || || ||||| ||||||||||||| ||| ||| | | || ||||| ||| Sbjct 6787 CGCAGGAAGGGGCACTGGGGCGCCCACCGCTGGTGATCCTTCGCGGGATCGTCACCCGGA 6728 Query 29414 ACCCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAG 29473 ||||| ||| |||| ||||| || |||||||||||||| || || ||||||||||||| | Sbjct 6727 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 6668 Query 29474 TAGTAGAACCC 29484 || ||||| || Sbjct 6667 TAATAGAAGCC 6657 >seq26980 Length=2195 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | |||||||| || ||||| || || |||||||||| || || | | || Sbjct 1169 AGCACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCCGATAGTGTCCGCCCATCT 1110 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| || || || || |||| |||||||| || || || | |||||||||||| Sbjct 1109 TCCAGTTGCTTTCCGGCGAAAATTAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCT 1050 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| |||||| | || ||||| || ||||| Sbjct 1049 TGAATCTTTGCCTTCACGTTCTCGATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTT 990 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTATAA 21191 || || ||||| ||||| || || |||||||| ||||||| | |||| Sbjct 989 TTCCCAGTTAAGGTTTTTACGAAAATTTGCATGATGAATCTGTAATAA 942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| || || ||||| ||||| ||||| || | ||| || | | || Sbjct 1625 AGCACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTGACAGTGTACGTCCATCT 1566 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 1565 TCCAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTGTCT 1506 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || ||| || || | | | |||||| | || ||||| || ||||| Sbjct 1505 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTT 1446 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || || || ||||| ||||||||| Sbjct 1445 TTGCCAGTCAATGTCTTTACAAAAATTTGCATT 1413 >seq422991 Length=614 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || |||| ||||| | ||| || ||||| |||||||||||||| ||||| Sbjct 14 TTACCTCCGCGAAGCCGAAGCACAAGATGTAATGTGGATTCCTTTTGAATGTTGTAGTCA 73 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || | | || || |||||||| || ||| | || | || |||||||| Sbjct 74 GACAATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGT 133 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||| || |||||| ||| || | | | ||||||| || ||| Sbjct 134 GGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCTATAGTATCAGAGGCTTCC 193 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||||||||| || || || | || ||||| || ||||||||| ||| Sbjct 194 ACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGA 248 >seq78338 Length=1389 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| |||||||| || || || || ||||| | | Sbjct 710 CCTCCTCGGAGACGGAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 651 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| ||||| ||| | || || | || || || || Sbjct 650 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGAGGA 591 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | | | ||||||| ||||| | Sbjct 590 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCAACT 531 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| || || ||||| || | ||||||||||||||||||||| Sbjct 530 TCCAAGGTTATTGTTTTGCCAGTAAGTGTTTTGACAAATATTTGCATT 483 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||| | |||| ||| ||||| |||||||| || || || | Sbjct 484 TTCCACCACGGAGACGAAGCACTAAGTGCAGAGTCGACTCTTTTTGAATATTGTAATCAG 425 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | || |||| || || || ||| |||| || | ||| ||||| || Sbjct 424 ACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGG 365 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| ||||| || ||||| ||||| | | | || ||| || || Sbjct 364 GGATGCCCTCCTTATCCTGTATCTTAGCCTTCACATTCTCAATTGTGTCAGATGGTTCTA 305 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||||||||||||| |||| || ||||||||||||||||| Sbjct 304 CTTCCAGGGTAATGGTCTTGCCTGTTAGGGTCTTGACAAATATTTGCAT 256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | |||| |||||||||||||| || ||||| || ||||| | Sbjct 938 CCTCCTCGCAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 879 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| ||||| || |||| || | || ||||| ||| Sbjct 878 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATTAGGCGTTGTTGGTCTGGGGGA 819 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||||| ||| || | | | ||| || ||| || | Sbjct 818 ATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 759 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || ||||| || | || || ||||| || ||||| Sbjct 758 TCTAATGTGATAGTTTTGCCTGTGAGTGTCTTTACAAAGATCTGCAT 712 >seq78339 Length=2434 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| || | |||||||| || || || || ||||| | | Sbjct 2419 CCGCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 2360 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || ||||| || ||||| ||| | || || | || ||||| ||| Sbjct 2359 AGAGTGCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCAGGGGGG 2300 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| ||||| | | | || ||| || || | Sbjct 2299 ATACCCTCCTTATCCTGTATCTTAGCCTTCACATTCTCAATTGTGTCAGATGGTTCTACT 2240 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||| || || || |||||||||||||||||||| Sbjct 2239 TCCAGGGTAATGGTCTTTCCTGTCAATGTTTTGACAAATATTTGCAT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419005842766016