Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3071 127 3e-24 seq26980 122 1e-22 seq78339 116 5e-21 seq26979 111 2e-19 seq78340 104 3e-17 seq26981 91.5 2e-13 >seq3071 Length=6863 Score = 127 bits (140), Expect = 3e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || ||||| || | ||||| | ||||| | ||||| |||||||| Sbjct 779 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 838 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | |||||||||| | | || | ||| |||||||| ||||| |||||||||||| ||| Sbjct 839 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAAT 898 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 ||| || || | | | |||| || | | ||||||||||||||||| || ||| Sbjct 899 TTTCTACCCGGATTTAGTTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGAAGGTGG 958 Query 10679 TTTTGGATCTACTGG 10693 |||||| ||||| || Sbjct 959 TTTTGGGTCTACAGG 973 >seq26980 Length=2195 Score = 122 bits (134), Expect = 1e-22 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | |||||||||||| ||||||||||| ||||| || |||| Sbjct 1870 TTCCACCTCTCAGGCGCAGTACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTG 1811 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| |||||||||||||| | |||||||||||| || | Sbjct 1810 ACAGTGTGCGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 1751 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || || ||||| || ||||| ||| || | Sbjct 1750 GAATACCCTCCTTATCCTGAATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 1691 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| |||||||| ||||| || |||| ||| || | || ||||||||| Sbjct 1690 CTTCCAGTGTGATAGTTTTGCCAGTTAGTGTCTTTACAAAAATTTGCATT 1641 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||| ||||||||||||||||| || ||||||||| || || Sbjct 2096 CCACCTCTCAGACGCAGTACTAAATGTAAAGTAGATTCCTTTTGTATATTATAGTCGGAG 2037 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||||||| |||||||| | ||||| ||||| |||||| Sbjct 2036 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGATCTGGAGGA 1977 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 1976 ATGCCTTCTTTATCCTG 1960 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| |||| || |||||| ||||||||||| || || ||||| || || | Sbjct 1414 TTCCACCTCTCAGTCGTAGTACCAAGTGTAAAGTAGACTCCTTCTGAATATTGTAGTCAG 1355 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || ||||| |||||||| | |||||||||||| || | Sbjct 1354 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCTGCAAAAATAAGTCTTTGCTGATCTGGGG 1295 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| |||||||| || ||||| ||| || | Sbjct 1294 GAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 1235 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||||| ||||| || || || || | ||| || | ||| ||||||||| Sbjct 1234 CTTCTAGAGTGATAGTCTTGCCAGTCAGTGTCTTCACGAAAATTTGCATT 1185 Score = 102 bits (112), Expect = 1e-16 Identities = 155/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | | || || || ||||||||||| || |||||||| || | Sbjct 1186 TTCCACCCCTGAGACGCAGCACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCCG 1127 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| ||||| || ||||| | ||| || ||||| |||| Sbjct 1126 ATAGTGTCCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATTAGTCTCTGTTGATCTGGAG 1067 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| ||||| ||| ||||| Sbjct 1066 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACGTTCTCGATTGTATCAGAAGCTTCTA 1007 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||| ||||| || ||||| ||||| | ||| |||||||| Sbjct 1006 CTTCCAATGTGATGGTTTTCCCAGTTAAGGTTTTTACGAAAATTTGCAT 958 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||| | | || || || || || ||||| || ||||||||||||| Sbjct 1642 TTCCACCCCTAAGGCGCAGCACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTG 1583 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | |||||||| |||||||| | || || || || |||| Sbjct 1582 ACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAG 1523 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||| ||||| ||||| ||| ||||| Sbjct 1522 GGATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTA 1463 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | |||||| ||||| || || ||||| || | || ||||||||| Sbjct 1462 CTTCCAATGTGATGGTTTTGCCAGTCAATGTCTTTACAAAAATTTGCATT 1413 >seq78339 Length=2434 Score = 116 bits (128), Expect = 5e-21 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | |||||||| || | |||||||||||| || || || || | Sbjct 1509 TTCCACCACGGAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGG 1450 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || || || ||||| ||||||||||||||||| | ||| ||||| |||| Sbjct 1449 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAG 1390 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| ||| || ||| ||| | Sbjct 1389 GAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAA 1330 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| | || || |||||||| || | |||||| | ||| || |||||||| Sbjct 1329 CTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTT 1278 Score = 102 bits (112), Expect = 1e-16 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| ||||||| ||||||||| ||| || ||||||||||| || | || | || ||| Sbjct 1720 AATACTAAATGTAGAGTAGATTCCTTTTGA-ATATTATAATCAGATAATGTACGGCCATC 1662 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || ||||| |||||||||||||| | || || || || || ||||| |||||||| || Sbjct 1661 TTCCAATTGCTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGAATACCTTCTTTGTC 1602 Query 146185 TTG 146187 ||| Sbjct 1601 TTG 1599 >seq26979 Length=899 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | || || || || ||||||||||| || ||||||||||||| Sbjct 307 TTCCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCTG 248 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| |||||||| ||||||| |||||| ||||| |||| Sbjct 247 ACAGTGTGCGTCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAG 188 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || ||||| Sbjct 187 GAATGCCTTCCTTGTCTTG 169 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | |||||| || || ||||||||||| ||||| || |||| Sbjct 763 TTCCACCTCTTAGCCGCAGTACCAAGTGCAAGGTAGATTCTTTTTGAATATTGTAGTCTG 704 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || | |||||| ||||||||||| | || || || || || | Sbjct 703 ACAAAGTGCGTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGGTCTGGGG 644 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || || |||||||| Sbjct 643 GAATCCCCTCCTTATCTTG 625 >seq78340 Length=230 Score = 104 bits (114), Expect = 3e-17 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||| |||||||||||||||||||| ||||| || || ||||| || | | ||| || Sbjct 216 TACTAAATGTAAAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGTGTACGACCATCTTC 157 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || || ||||| | | ||| ||||| |||||||| |||||||||||||| Sbjct 156 CAATTGCTTGCCTGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 97 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 || || || ||| ||||||| ||| |||||||| Sbjct 96 AATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAATGTAATTGTTTT 37 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | |||||||| || |||||||| Sbjct 36 TCCAGTAAGTGTTTTAACAAAGATTTGCAT 7 >seq26981 Length=233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||| ||||| |||||||||||||| ||||| || || ||||| || | | ||| || Sbjct 219 TACTAAATGCAAAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGTGTACGTCCATCTTC 160 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || || ||||| | | ||| ||||| |||||||| |||||||| ||||| Sbjct 159 CAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737650905681920