Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq227148 536 2e-147 seq352311 100 4e-16 seq36366 98.7 1e-15 seq242670 95.1 2e-14 seq187312 91.5 2e-13 >seq227148 Length=2115 Score = 536 bits (594), Expect = 2e-147 Identities = 1216/1806 (67%), Gaps = 59/1806 (3%) Strand=Plus/Minus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| | || || | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||| ||||||| ||| | |||| ||| ||||| ||| ||||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 || | || | || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCG 62266 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 62267 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCT 62323 |||| | |||| |||| |||| ||| || || |||||| | || || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||| || || || |||| |||||| | | || ||| | | || || || |||| Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | || ||| | || || | |||||| ||||| || |||||||||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | | ||| | | ||||| | ||| || || ||||| || |||| | |||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 62564 ATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-G 62615 || | || | | ||| ||| ||||| ||||| | || || | Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGTAGGATACCTTGGCTTGCTG 1245 Query 62616 TACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCT 62675 || ||| |||||| |||| ||||| || || |||| || |||||| || ||| Sbjct 1244 GACTC-CCTTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCT 1186 Query 62676 AATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTA 62735 |||||||| |||||||| |||||||| || | | ||| |||| | ||||| || Sbjct 1185 AATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCACTT 1126 Query 62736 TCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 || | || || | | | | | |||||| || || | || |||||||||||||| || Sbjct 1125 TCGTAAGG-TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAAT 1067 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 |||||| |||||| |||| || ||| ||||| || | ||||||| | |||| ||| || Sbjct 1066 AGGTCTGTGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAAT 1007 Query 62855 AATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC 62911 | ||| || | |||| | ||||| ||||| | || || | || ||||| Sbjct 1006 GACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAACTTTTTAAAATT 950 Query 62912 AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTAC 62971 ||||| | || | ||||||||||| | ||| | || || || ||||| || || || Sbjct 949 AAATCTCTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCAC 890 Query 62972 CTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 || | | || | | ||||| | | ||||||||||||||| ||||| || || || Sbjct 889 TTCTT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGT 833 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 || | ||||| |||||||||||| ||||||| ||||||||||| | ||| |||| || Sbjct 832 GCCAAGATTTTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGT 773 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TAT 63142 |||||| || | || | ||||||||| | ||||| | || |||| ||| | | Sbjct 772 ACCAGTCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTT 713 Query 63143 TATAGATT-TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 |||| || ||| ||| ||| | ||| ||||| ||| || |||||| || |||| Sbjct 712 TATAAATCGTGTTTCTTCTTCATATTTGGTATATAGT------TC-TTCGAATTCCTCTC 660 Query 63202 CCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 | || | | | | ||||| |||| |||||||| | ||| | | |||| Sbjct 659 CATAACAGTCAGCGAGGCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCAT 600 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | |||| ||||||||| |||||||||||||| | ||| ||| || ||||| | || Sbjct 599 TTTCTACTCTTTTCATAAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTC 540 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||| || || ||||||||||| || | ||| | |||| | | || || | ||||| Sbjct 539 TCATTTCTTCCTTACCTGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCC 480 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 | || || || || || || | | ||||| ||||||||||| || ||||||| |||| Sbjct 479 AAGGCTCTAAATAAATTGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATC 420 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 | || || || ||||| |||||||||||||| | | ||| || || | ||||| || | Sbjct 419 TGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGC 360 Query 63502 CGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCT 63557 | | || || || ||| || | || || || || || |||||| || || Sbjct 359 CAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCA 304 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||||| |||||||| || ||||||| || ||| | || ||||| |||||||| Sbjct 303 GCAGATTTAGAAATTAATGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCG 244 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || |||| | || || || || | || | || | || | || || Sbjct 243 TCTTTCATAGCTATAAGGAAGCAAGAGGAAAGCTGTGGCCGTGGTGTAGCTGCTGAGAAC 184 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 | ||||| ||||| ||||| |||| || || | | ||| || || | || || Sbjct 183 AGTGTAGGGCTTGCGTGTGTAAAATATTTCTCCGACATCATATTATAAGTATTGATTGCA 124 Query 63738 GAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || || || || | ||||| |||| || ||| | ||| | |||||| |||||||| Sbjct 123 CTATCAATGTCTTCACCG-TGAATACCTATTGAGACTCTCATAAGCATGTGTTGAGGTCT 65 Query 63797 TTCAAC 63802 |||||| Sbjct 64 TTCAAC 59 >seq352311 Length=307 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || ||||||| ||| ||||| || |||||||| || | |||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 >seq36366 Length=4232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || ||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| |||||||||||||||| ||||| || | ||||||| Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAAACGTCTTGGATT 3713 >seq242670 Length=698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||| ||| |||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 391 TTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 450 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 ||| |||| || |||| ||| | || | | || ||||||| ||| Sbjct 451 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq187312 Length=1851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | | ||||||||| | |||| Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155489 ||||| | || | ||||| || |||| ||||||||| |||| | | | Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 155490 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 155546 |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 155547 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155606 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 155607 CTGTTTATA 155615 || || || Sbjct 1395 TTGCTTGTA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624840655361280